Literature DB >> 34892937

The geometric mean length, a new statistic to describe the distribution of character steps on a tree.

Philippe Grandcolas, Tony Robillard1, Cyrille D'Haese1, Laure Desutter-Grandcolas1, Eric Guilbert1, Jérôme Murienne1.   

Abstract

The geometric mean length (GML) is proposed as a new statistic aimed at describing the evenness of character changes on a tree for a given set of character optimizations. It is the geometric mean of the number of steps on each branch of the tree, varying between a maximum value when all branch lengths are equal, and a minimum value when all branches but one have only one character step. It can be scaled according to its theoretical maximum value, thus indicating a relative GML that allows a comparison of the evenness of character steps between different tree topologies.

Entities:  

Year:  2004        PMID: 34892937     DOI: 10.1111/j.1096-0031.2004.00017.x

Source DB:  PubMed          Journal:  Cladistics        ISSN: 0748-3007            Impact factor:   5.254


  4 in total

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2.  Minimally colored trees.

Authors:  I Rinsma; M Hendy; D Penny
Journal:  Math Biosci       Date:  1990-03       Impact factor: 2.144

3.  Path costs in evolutionary tree reconstruction.

Authors:  D S Hochbaum; A Pathria
Journal:  J Comput Biol       Date:  1997       Impact factor: 1.479

4.  Towards a basis for classification: the incompleteness of distance measures, incompatibility analysis and phenetic classification.

Authors:  D Penny
Journal:  J Theor Biol       Date:  1982-05-21       Impact factor: 2.691

  4 in total

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