Literature DB >> 34888942

Automated detection and reacquisition of motion-degraded images in fetal HASTE imaging at 3 T.

Borjan Gagoski1,2, Junshen Xu3, Paul Wighton4, M Dylan Tisdall5, Robert Frost2,4, Wei-Ching Lo6, Polina Golland3,7, Andre van der Kouwe2,4, Elfar Adalsteinsson3,8, P Ellen Grant1,2.   

Abstract

PURPOSE: Fetal brain Magnetic Resonance Imaging suffers from unpredictable and unconstrained fetal motion that causes severe image artifacts even with half-Fourier single-shot fast spin echo (HASTE) readouts. This work presents the implementation of a closed-loop pipeline that automatically detects and reacquires HASTE images that were degraded by fetal motion without any human interaction.
METHODS: A convolutional neural network that performs automatic image quality assessment (IQA) was run on an external GPU-equipped computer that was connected to the internal network of the MRI scanner. The modified HASTE pulse sequence sent each image to the external computer, where the IQA convolutional neural network evaluated it, and then the IQA score was sent back to the sequence. At the end of the HASTE stack, the IQA scores from all the slices were sorted, and only slices with the lowest scores (corresponding to the slices with worst image quality) were reacquired.
RESULTS: The closed-loop HASTE acquisition framework was tested on 10 pregnant mothers, for a total of 73 acquisitions of our modified HASTE sequence. The IQA convolutional neural network, which was successfully employed by our modified sequence in real time, achieved an accuracy of 85.2% and area under the receiver operator characteristic of 0.899.
CONCLUSION: The proposed acquisition/reconstruction pipeline was shown to successfully identify and automatically reacquire only the motion degraded fetal brain HASTE slices in the prescribed stack. This minimizes the overall time spent on HASTE acquisitions by avoiding the need to repeat the entire stack if only few slices in the stack are motion-degraded.
© 2021 International Society for Magnetic Resonance in Medicine.

Entities:  

Keywords:  HASTE MRI with reacquisition; automated image quality assessment; fetal brain MRI

Mesh:

Year:  2021        PMID: 34888942      PMCID: PMC8810713          DOI: 10.1002/mrm.29106

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   3.737


  21 in total

1.  Automated image quality evaluation of T2 -weighted liver MRI utilizing deep learning architecture.

Authors:  Steven J Esses; Xiaoguang Lu; Tiejun Zhao; Krishna Shanbhogue; Bari Dane; Mary Bruno; Hersh Chandarana
Journal:  J Magn Reson Imaging       Date:  2017-06-03       Impact factor: 4.813

Review 2.  Current state of MRI of the fetal brain in utero.

Authors:  Deborah A Jarvis; Paul D Griffiths
Journal:  J Magn Reson Imaging       Date:  2018-10-24       Impact factor: 4.813

3.  Convolutional Neural Networks for Medical Image Analysis: Full Training or Fine Tuning?

Authors:  Nima Tajbakhsh; Jae Y Shin; Suryakanth R Gurudu; R Todd Hurst; Christopher B Kendall; Michael B Gotway
Journal:  IEEE Trans Med Imaging       Date:  2016-03-07       Impact factor: 10.048

4.  PROMO: Real-time prospective motion correction in MRI using image-based tracking.

Authors:  Nathan White; Cooper Roddey; Ajit Shankaranarayanan; Eric Han; Dan Rettmann; Juan Santos; Josh Kuperman; Anders Dale
Journal:  Magn Reson Med       Date:  2010-01       Impact factor: 4.668

5.  Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease.

Authors:  Cynthia M Ortinau; Caitlin K Rollins; Ali Gholipour; Hyuk Jin Yun; Mackenzie Marshall; Borjan Gagoski; Onur Afacan; Kevin Friedman; Wayne Tworetzky; Simon K Warfield; Jane W Newburger; Terrie E Inder; P Ellen Grant; Kiho Im
Journal:  Cereb Cortex       Date:  2019-07-22       Impact factor: 5.357

6.  Fetal MRI: A Technical Update with Educational Aspirations.

Authors:  Ali Gholipour; Judith A Estroff; Carol E Barnewolt; Richard L Robertson; P Ellen Grant; Borjan Gagoski; Simon K Warfield; Onur Afacan; Susan A Connolly; Jeffrey J Neil; Adam Wolfberg; Robert V Mulkern
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2014-11       Impact factor: 0.481

7.  3D Super-Resolution Motion-Corrected MRI: Validation of Fetal Posterior Fossa Measurements.

Authors:  Danielle B Pier; Ali Gholipour; Onur Afacan; Clemente Velasco-Annis; Sean Clancy; Kush Kapur; Judy A Estroff; Simon K Warfield
Journal:  J Neuroimaging       Date:  2016-03-18       Impact factor: 2.486

8.  Intersection based motion correction of multislice MRI for 3-D in utero fetal brain image formation.

Authors:  Kio Kim; Piotr A Habas; Francois Rousseau; Orit A Glenn; Anthony J Barkovich; Colin Studholme
Journal:  IEEE Trans Med Imaging       Date:  2009-09-09       Impact factor: 10.048

9.  An automated framework for localization, segmentation and super-resolution reconstruction of fetal brain MRI.

Authors:  Michael Ebner; Guotai Wang; Wenqi Li; Michael Aertsen; Premal A Patel; Rosalind Aughwane; Andrew Melbourne; Tom Doel; Steven Dymarkowski; Paolo De Coppi; Anna L David; Jan Deprest; Sébastien Ourselin; Tom Vercauteren
Journal:  Neuroimage       Date:  2019-11-06       Impact factor: 6.556

10.  Navigator-based reacquisition and estimation of motion-corrupted data: Application to multi-echo spin echo for carotid wall MRI.

Authors:  Robert Frost; Luca Biasiolli; Linqing Li; Katherine Hurst; Mohammad Alkhalil; Robin P Choudhury; Matthew D Robson; Aaron T Hess; Peter Jezzard
Journal:  Magn Reson Med       Date:  2019-11-07       Impact factor: 4.668

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  2 in total

1.  Automatic Artifact Detection Algorithm in Fetal MRI.

Authors:  Adam Lim; Justin Lo; Matthias W Wagner; Birgit Ertl-Wagner; Dafna Sussman
Journal:  Front Artif Intell       Date:  2022-06-16

2.  Subject-specific optimization of background suppression for arterial spin labeling magnetic resonance imaging using a feedback loop on the scanner.

Authors:  Kirsten Koolstra; Marius Staring; Paul de Bruin; Matthias J P van Osch
Journal:  NMR Biomed       Date:  2022-05-09       Impact factor: 4.478

  2 in total

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