| Literature DB >> 34879323 |
Anita Dominique Subali1, Lowilius Wiyono2, Muhammad Yusuf3, Muhammad Fathi Athallah Zaky3.
Abstract
COVID-19 is a major problem with an increasing incidence and mortality. The discovery of Volatile Organic Compounds (VOCs) based on breath analysis offers a reliable, rapid, and affordable screening method. This study examined VOC-based breath analysis diagnostic performance for SARS-COV-2 infection compared to RT-PCR. A systematic review was conducted in 8 scientific databases based on the PRISMA guideline. Original English studies evaluating human breaths for COVID-19 screening and mentioning sensitivity and specificity value compared to RT-PCR were included. Six studies were included with a total of 4093 samples from various settings. VOCs-based breath analysis had the cumulative sensitivity of 98.2% (97.5% CI 93.1%-99.6%) and specificity of 74.3% (97.5% CI 66.4%-80.9%). Subgroup analysis on chemical analysis (GC-MS) and pattern recognition (eNose) revealed higher sensitivity in the eNose group. VOC-based breath analysis shows high sensitivity and promising specificity for COVID-19 public screening.Entities:
Keywords: COVID-19, screening, diagnosis, volatile organic compound; breath analysis, breath-testing
Mesh:
Substances:
Year: 2021 PMID: 34879323 PMCID: PMC8556067 DOI: 10.1016/j.diagmicrobio.2021.115589
Source DB: PubMed Journal: Diagn Microbiol Infect Dis ISSN: 0732-8893 Impact factor: 2.803
Fig. 1Literature search flowchart.
Included studies characteristics.
| Studies, y | Location | Settings | Design | Sample size | COVID-19 +ve | COVID-19 -ve | Sample population | Index Test | Reference Test | Sample Collection |
|---|---|---|---|---|---|---|---|---|---|---|
| Maastricht, Netherlands | Hospital | prospective, proof-of-principle cohort | 219 | 57 | 162 | Outpatient, clinic employees with COVID-19 symptom | Aeonose, (The Aeonose Company, Zutphen, the Netherlands | RT-PCR | Participants breathed for 5 consecutive min through a disposable mouthpiece containing both a carbon filter and a high-efficiency particulate air (HEPA) filter to prevent contamination of the internal tubing | |
| Berna, et al 2020 | Pennsylvania, USA | Hospital | cross sectional | 25 | 10 | 15 | Children confirmed positive/negative by NP RT-PCR | Three-bed Universal sorbent tubes containing Tenax, Carbograph, and Carboxen | NP RT-PCR | SARS-CoV-2-infected and -uninfected subjects exhaled through a disposable cardboard mouthpiece connected to a chamber. |
| Grassin-Delyle 2020 | Garches, France | Hospital | prospective observational study | 40 | 28 | 12 | ARDS patients, requiring invasive mechanical ventilation | proton-transfer-reaction quadrupole time-of-flight mass spectrometer | RT-PCR | Heated transfer line connected directly to the end of endotracheal tube |
| Vries | Amsterdam | Public | Prospective case control | 1948 | 1718 | 230 | Early symptoms suggestive of COVID-19 and/or who had been in contact with someone diagnosed with COVID-19 | cloud-connected eNose (SpiroNose®) | RT-PCR | Exhaled breathing during nasopharyngeal swab |
| Edinburgh, UK, and Dortmund, Germany | Hospital | observational prospective case control | 65 | 55 | 10 | Emergency patient or outpatient clinic; respiratory symptoms; possible COVID-19. | GC-IMS (BreathSpec, G.A.S. Dortmund) | RT- qPCR | single breath-sample (forced exhale) with a single use sampling device | |
| Wuhan, China | Hospital | case-control | 69 | 30 | 39 | COVID-19 patients; confirmed by CT, nasal and pharyngeal swab specimens RT-PCR, and antibody tests | Breathalyzer (Nanovation, Israel) | RT-PCR | Breath samples were collected by the study subjects breathing directly into the aperture of the instrument for at least 4 seconds, keeping the instrument approximately 1–2 cm from the mouth. |
Fig. 2QUADAS-2 assessment on the risk of bias and concerns of applicability.
Study outcomes.
| Studies, y | Annotation | True Positive (TP) | False Negative (FN) | False Positive (FP) | True Negative (TN) | Total Sample | Sensitivity (Sn; %) | Specificity (Sp; %) |
|---|---|---|---|---|---|---|---|---|
| Wintjens | N/A | 49 | 8 | 75 | 87 | 219 | 86 | 53.7 |
| Berna | N/A | 10 | 0 | 5 | 10 | 25 | 100 | 66.6 |
| Grassin-Delyle | N/A | 25 | 3 | 1 | 11 | 40 | 90 | 94 |
| Vries | Validation Set | 871 | 0 | 7 | 26 | 904 | 100 | 78.8 |
| Replication Set | 1711 | 7 | 46 | 184 | 1948 | 99.6 | 80 | |
| Asymptomatic Set | 689 | 15 | 11 | 39 | 754 | 97.9 | 78 | |
| Ruszkiewicz | Edinburgh Set | 17 | 4 | 3 | 9 | 33 | 81 | 75 |
| Dortmund Set | 9 | 1 | 11 | 44 | 65 | 90 | 80 | |
| Shan | COVID-19 vs Control Testing Set | 11 | 0 | 7 | 11 | 29 | 100 | 61.1 |
| COVID-19 vs Lung Infection Testing Set | 12 | 0 | 1 | 9 | 22 | 100 | 90 |
Fig. 3Forest plot of sensitivity and specificity of VOC-based breath analysis on included studies.
Pooled analysis outcome of meta-analysis on 6 studies, summarized in this table with sensitivity, specificity, false positive rate, logit of sensitivity and specificity, positive predictive value, and negative predictive value.
| Parameter | VOC vs RT-PCR (97.5% CI) | GC-MS Breath Analysis (97.5% CI) | Pattern Recognition Breath Analysis (97.5% CI) |
|---|---|---|---|
| Sensitivity | 98.2% (93.1%−99.6%) | 88.4% (78.5%−94.1%) | 99.1% (95.3%−99.8%) |
| Specificity | 74.3% (66.4%−80.9%) | 78.7% (69.3%−85.8%) | 74.6% (63.6%−83.2%) |
| logit(sensitivity) | 4.008 (2.602−5.413) | 2.031 (1.294−2.768) | 4.701 (3.002−6.401) |
| logit(specificity) | 1.062 (0.68−1.445) | 1.308 (0.814−1.802) | 1.08 (0.556−1.603) |
| False Positive Rate | 25.7% (19.1%−33.6%) | 21.3% (14.2%−30.7%) | 25.4% (16.8%−36.4%) |
| Positive Predictive Value | 10.28% | 11.06% | 10.47% |
| Negative Predictive Value | 99.93% | 99.56% | 99.96% |
Predictive value is calculated with assumption of COVID-19 prevalence of 2.91% based on the recent COVID-19 report (WHO COVID-19 Dashboard) as per September 2021.