Literature DB >> 34871738

Multi-omic insights into Parkinson's Disease: From genetic associations to functional mechanisms.

Brian M Schilder1, Elisa Navarro2, Towfique Raj3.   

Abstract

Genome-Wide Association Studies (GWAS) have elucidated the genetic components of Parkinson's Disease (PD). However, because the vast majority of GWAS association signals fall within non-coding regions, translating these results into an interpretable, mechanistic understanding of the disease etiology remains a major challenge in the field. In this review, we provide an overview of the approaches to prioritize putative causal variants and genes as well as summarise the primary findings of previous studies. We then discuss recent efforts to integrate multi-omics data to identify likely pathogenic cell types and biological pathways implicated in PD pathogenesis. We have compiled full summary statistics of cell-type, tissue, and phentoype enrichment analyses from multiple studies of PD GWAS and provided them in a standardized format as a resource for the research community (https://github.com/RajLabMSSM/PD_omics_review). Finally, we discuss the experimental, computational, and conceptual advances that will be necessary to fully elucidate the effects of functional variants and genes on cellular dysregulation and disease risk.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Genome-wide association study (GWAS); Meta-analysis; Multi-omics; Neurodegeneration; Parkinson's Disease; Phenome; Quantitative trait loci (QTL)

Mesh:

Year:  2021        PMID: 34871738     DOI: 10.1016/j.nbd.2021.105580

Source DB:  PubMed          Journal:  Neurobiol Dis        ISSN: 0969-9961            Impact factor:   5.996


  6 in total

1.  Hub genes associated with immune cell infiltration in breast cancer, identified through bioinformatic analyses of multiple datasets.

Authors:  Huanyu Zhao; Ruoyu Dang; Yipan Zhu; Baijian Qu; Yasra Sayyed; Ying Wen; Xicheng Liu; Jianping Lin; Luyuan Li
Journal:  Cancer Biol Med       Date:  2022-07-13       Impact factor: 5.347

2.  Human IPSC 3D brain model as a tool to study chemical-induced dopaminergic neuronal toxicity.

Authors:  David Pamies; Daphne Wiersma; Moriah E Katt; Liang Zhao; Johannes Burtscher; Georgina Harris; Lena Smirnova; Peter C Searson; Thomas Hartung; Helena T Hogberg
Journal:  Neurobiol Dis       Date:  2022-04-07       Impact factor: 7.046

Review 3.  Studies of neurodegenerative diseases using Drosophila and the development of novel approaches for their analysis.

Authors:  Yohei Nitta; Atsushi Sugie
Journal:  Fly (Austin)       Date:  2022-12       Impact factor: 1.143

4.  Integrative Organelle-Based Functional Proteomics: In Silico Prediction of Impaired Functional Annotations in SACS KO Cell Model.

Authors:  Federica Morani; Stefano Doccini; Daniele Galatolo; Francesco Pezzini; Rabah Soliymani; Alessandro Simonati; Maciej M Lalowski; Federica Gemignani; Filippo M Santorelli
Journal:  Biomolecules       Date:  2022-07-24

5.  Integrated transcriptomics and metabolomics analysis of the hippocampus reveals altered neuroinflammation, downregulated metabolism and synapse in sepsis-associated encephalopathy.

Authors:  Kejia Xu; Hui Li; Bing Zhang; Meini Le; Qiong Huang; Rao Fu; Giorgia Croppi; Gang Qian; Junjie Zhang; Guangming Zhang; Yinzhong Lu
Journal:  Front Pharmacol       Date:  2022-09-06       Impact factor: 5.988

Review 6.  The immunology of Parkinson's disease.

Authors:  Biqing Zhu; Dominic Yin; Hongyu Zhao; Le Zhang
Journal:  Semin Immunopathol       Date:  2022-06-08       Impact factor: 11.759

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.