Literature DB >> 34870822

Single-Cell Sequencing for Everybody.

Valentina Proserpio1,2, Carlotta Duval3,4, Vanessa Falvo3,4, Giacomo Donati3,4, Salvatore Oliviero5,6.   

Abstract

Over the past 7 years, single-cell sequencing has become very popular. For this reason, many laboratories of different biological disciplines that span from neurobiology to developmental biology from immunology to tumor biology have been approaching this technique. For someone new to this field that wants to investigate heterogeneity in what appears to be a single-cell population, the choice of the best protocol can be difficult, due to the high abundance of available protocols, instruments, and options. For this reason, here we describe the Smart-seq2 protocol for full-length mRNA sequencing of single cell. This protocol can be easily optimized in every molecular biology laboratory provided with standard laboratory equipment. The protocol is suitable for many different cell types, and the cost per cell is relatively small, allowing a good balance between costs and transcript coverage.
© 2022. Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Full length; Single cell; Smart-seq2; mRNA-seq

Mesh:

Year:  2022        PMID: 34870822     DOI: 10.1007/978-1-0716-1944-5_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  Full-length RNA-seq from single cells using Smart-seq2.

Authors:  Simone Picelli; Omid R Faridani; Asa K Björklund; Gösta Winberg; Sven Sagasser; Rickard Sandberg
Journal:  Nat Protoc       Date:  2014-01-02       Impact factor: 13.491

2.  Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

Authors:  Simone Picelli; Åsa K Björklund; Omid R Faridani; Sven Sagasser; Gösta Winberg; Rickard Sandberg
Journal:  Nat Methods       Date:  2013-09-22       Impact factor: 28.547

Review 3.  A practical guide to single-cell RNA-sequencing for biomedical research and clinical applications.

Authors:  Ashraful Haque; Jessica Engel; Sarah A Teichmann; Tapio Lönnberg
Journal:  Genome Med       Date:  2017-08-18       Impact factor: 11.117

Review 4.  Single-cell technologies to study the immune system.

Authors:  Valentina Proserpio; Bidesh Mahata
Journal:  Immunology       Date:  2015-12-27       Impact factor: 7.397

  4 in total
  1 in total

Review 1.  Reshaping the systemic tumor immune environment (STIE) and tumor immune microenvironment (TIME) to enhance immunotherapy efficacy in solid tumors.

Authors:  Liangliang Xu; Chang Zou; Shanshan Zhang; Timothy Shun Man Chu; Yan Zhang; Weiwei Chen; Caining Zhao; Li Yang; Zhiyuan Xu; Shaowei Dong; Hao Yu; Bo Li; Xinyuan Guan; Yuzhu Hou; Feng-Ming Kong
Journal:  J Hematol Oncol       Date:  2022-07-07       Impact factor: 23.168

  1 in total

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