Literature DB >> 34864885

Network analytics for drug repurposing in COVID-19.

Nicoleta Siminea1, Victor Popescu2, Jose Angel Sanchez Martin3, Daniela Florea4, Georgiana Gavril4, Ana-Maria Gheorghe4, Corina Iţcuş5, Krishna Kanhaiya2, Octavian Pacioglu4, Laura Lona Popa6, Romica Trandafir7, Maria Iris Tusa8, Manuela Sidoroff8, Mihaela Păun9, Eugen Czeizler4, Andrei Păun10, Ion Petre11.   

Abstract

To better understand the potential of drug repurposing in COVID-19, we analyzed control strategies over essential host factors for SARS-CoV-2 infection. We constructed comprehensive directed protein-protein interaction (PPI) networks integrating the top-ranked host factors, the drug target proteins and directed PPI data. We analyzed the networks to identify drug targets and combinations thereof that offer efficient control over the host factors. We validated our findings against clinical studies data and bioinformatics studies. Our method offers a new insight into the molecular details of the disease and into potentially new therapy targets for it. Our approach for drug repurposing is significant beyond COVID-19 and may be applied also to other diseases.
© The Author(s) 2021. Published by Oxford University Press.

Entities:  

Keywords:  COVID-19; drug repurposing; host factors; network biology; network controllability

Mesh:

Substances:

Year:  2022        PMID: 34864885      PMCID: PMC8690228          DOI: 10.1093/bib/bbab490

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  81 in total

1.  Structural Target Controllability of Linear Networks.

Authors:  Eugen Czeizler; Kai-Chiu Wu; Cristian Gratie; Krishna Kanhaiya; Ion Petre
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-01-23       Impact factor: 3.710

2.  The ClinicalTrials.gov results database--update and key issues.

Authors:  Deborah A Zarin; Tony Tse; Rebecca J Williams; Robert M Califf; Nicholas C Ide
Journal:  N Engl J Med       Date:  2011-03-03       Impact factor: 91.245

3.  Computational View toward the Inhibition of SARS-CoV-2 Spike Glycoprotein and the 3CL Protease.

Authors:  Zhen Qiao; Hongtao Zhang; Hai-Feng Ji; Qian Chen
Journal:  Computation (Basel)       Date:  2020-05-31

4.  Baricitinib restrains the immune dysregulation in patients with severe COVID-19.

Authors:  Vincenzo Bronte; Stefano Ugel; Elisa Tinazzi; Antonio Vella; Francesco De Sanctis; Stefania Canè; Veronica Batani; Rosalinda Trovato; Alessandra Fiore; Varvara Petrova; Francesca Hofer; Roza Maria Barouni; Chiara Musiu; Simone Caligola; Laura Pinton; Lorena Torroni; Enrico Polati; Katia Donadello; Simonetta Friso; Francesca Pizzolo; Manuela Iezzi; Federica Facciotti; Pier Giuseppe Pelicci; Daniela Righetti; Paolo Bazzoni; Mariaelisa Rampudda; Andrea Comel; Walter Mosaner; Claudio Lunardi; Oliviero Olivieri
Journal:  J Clin Invest       Date:  2020-12-01       Impact factor: 14.808

5.  Senolytic Combination of Dasatinib and Quercetin Alleviates Intestinal Senescence and Inflammation and Modulates the Gut Microbiome in Aged Mice.

Authors:  Tatiana Dandolini Saccon; Ravinder Nagpal; Hariom Yadav; Marcelo Borges Cavalcante; Allancer Divino de Carvalho Nunes; Augusto Schneider; Adam Gesing; Brian Hughes; Matthew Yousefzadeh; Tamar Tchkonia; James L Kirkland; Laura J Niedernhofer; Paul D Robbins; Michal M Masternak
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2021-10-13       Impact factor: 6.053

Review 6.  Immunopathology of SARS-CoV-2 Infection: Immune Cells and Mediators, Prognostic Factors, and Immune-Therapeutic Implications.

Authors:  Alessandro Allegra; Mario Di Gioacchino; Alessandro Tonacci; Caterina Musolino; Sebastiano Gangemi
Journal:  Int J Mol Sci       Date:  2020-07-06       Impact factor: 5.923

7.  Combination of Ruxolitinib and Eculizumab for Treatment of Severe SARS-CoV-2-Related Acute Respiratory Distress Syndrome: A Controlled Study.

Authors:  Valentina Giudice; Pasquale Pagliano; Alessandro Vatrella; Alfonso Masullo; Sergio Poto; Benedetto Maria Polverino; Renato Gammaldi; Angelantonio Maglio; Carmine Sellitto; Carolina Vitale; Bianca Serio; Bianca Cuffa; Anna Borrelli; Carmine Vecchione; Amelia Filippelli; Carmine Selleri
Journal:  Front Pharmacol       Date:  2020-06-05       Impact factor: 5.810

8.  In silico investigation of saponins and tannins as potential inhibitors of SARS-CoV-2 main protease (Mpro).

Authors:  Victoria Adeola Falade; Temitope Isaac Adelusi; Ibrahim Olaide Adedotun; Misbaudeen Abdul-Hammed; Teslim Alabi Lawal; Saheed Alabi Agboluaje
Journal:  In Silico Pharmacol       Date:  2021-01-06

9.  Baricitinib treatment resolves lower-airway macrophage inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques.

Authors:  Timothy N Hoang; Maria Pino; Arun K Boddapati; Elise G Viox; Carly E Starke; Amit A Upadhyay; Sanjeev Gumber; Michael Nekorchuk; Kathleen Busman-Sahay; Zachary Strongin; Justin L Harper; Gregory K Tharp; Kathryn L Pellegrini; Shannon Kirejczyk; Keivan Zandi; Sijia Tao; Tristan R Horton; Elizabeth N Beagle; Ernestine A Mahar; Michelle Y H Lee; Joyce Cohen; Sherrie M Jean; Jennifer S Wood; Fawn Connor-Stroud; Rachelle L Stammen; Olivia M Delmas; Shelly Wang; Kimberly A Cooney; Michael N Sayegh; Lanfang Wang; Peter D Filev; Daniela Weiskopf; Guido Silvestri; Jesse Waggoner; Anne Piantadosi; Sudhir P Kasturi; Hilmi Al-Shakhshir; Susan P Ribeiro; Rafick P Sekaly; Rebecca D Levit; Jacob D Estes; Thomas H Vanderford; Raymond F Schinazi; Steven E Bosinger; Mirko Paiardini
Journal:  Cell       Date:  2020-11-10       Impact factor: 41.582

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  2 in total

1.  Network controllability solutions for computational drug repurposing using genetic algorithms.

Authors:  Victor-Bogdan Popescu; Krishna Kanhaiya; Dumitru Iulian Năstac; Eugen Czeizler; Ion Petre
Journal:  Sci Rep       Date:  2022-01-26       Impact factor: 4.379

2.  New Life of an Old Drug: Caffeine as a Modulator of Antibacterial Activity of Commonly Used Antibiotics.

Authors:  Anna Woziwodzka; Marta Krychowiak-Maśnicka; Grzegorz Gołuński; Anna Łosiewska; Agnieszka Borowik; Dariusz Wyrzykowski; Jacek Piosik
Journal:  Pharmaceuticals (Basel)       Date:  2022-07-15
  2 in total

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