Literature DB >> 34861358

A framework for validating open-source pulse sequences.

Gehua Tong1, Andreia S Gaspar2, Enlin Qian1, Keerthi Sravan Ravi1, John Thomas Vaughan3, Rita G Nunes2, Sairam Geethanath4.   

Abstract

Open-source pulse sequence programs offer an accessible and transparent approach to sequence development and deployment. However, a common framework for testing, documenting, and sharing open-source sequences is still needed to ensure sequence usability and repeatability. We propose and demonstrate such a framework by implementing two sequences, Inversion Recovery Spin Echo (IRSE) and Turbo Spin Echo (TSE), with PyPulseq, and testing them on a commercial 3 T scanner. We used the ACR and ISMRM/NIST phantoms for qualitative imaging and T1/T2 mapping, respectively. The qualitative sequences show good agreement with vendor-provided counterparts (mean Structural Similarity Index Measure (SSIM) = 0.810 for IRSE and 0.826 for TSE). Both sequences passed five out of the seven standard ACR tests, performing at similar levels to vendor counterparts. Compared to reference values, the coefficient of determination R2 was 0.9946 for IRSE T1 mapping and 0.9331 for TSE T2 mapping. All sequences passed the scanner safety check for a 70 kg, 175 cm subject. The framework was demonstrated by packaging the sequences and sharing them on GitHub with data and documentation on the file generation, acquisition, reconstruction, and post-processing steps. The same sequences were tested at a second site using a 1.5 T scanner with the information shared. PDF templates for both sequence developers and users were created and filled.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Pulse sequence programming; Pulse sequence simulation; Repeatability; Reproducible research

Mesh:

Year:  2021        PMID: 34861358     DOI: 10.1016/j.mri.2021.11.014

Source DB:  PubMed          Journal:  Magn Reson Imaging        ISSN: 0730-725X            Impact factor:   2.546


  1 in total

1.  Open-source magnetic resonance imaging acquisition: Data and documentation for two validated pulse sequences.

Authors:  Gehua Tong; Andreia S Gaspar; Enlin Qian; Keerthi Sravan Ravi; John Thomas Vaughan; Rita G Nunes; Sairam Geethanath
Journal:  Data Brief       Date:  2022-03-28
  1 in total

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