Literature DB >> 34861191

An NK-like CAR T cell transition in CAR T cell dysfunction.

Charly R Good1, M Angela Aznar2, Shunichiro Kuramitsu2, Parisa Samareh1, Sangya Agarwal3, Greg Donahue1, Kenichi Ishiyama4, Nils Wellhausen2, Austin K Rennels2, Yujie Ma2, Lifeng Tian5, Sonia Guedan2, Katherine A Alexander1, Zhen Zhang1, Philipp C Rommel2, Nathan Singh2, Karl M Glastad1, Max W Richardson6, Keisuke Watanabe2, Janos L Tanyi7, Mark H O'Hara8, Marco Ruella9, Simon F Lacey5, Edmund K Moon10, Stephen J Schuster11, Steven M Albelda10, Lewis L Lanier4, Regina M Young12, Shelley L Berger13, Carl H June14.   

Abstract

Chimeric antigen receptor (CAR) T cell therapy has achieved remarkable success in hematological malignancies but remains ineffective in solid tumors, due in part to CAR T cell exhaustion in the solid tumor microenvironment. To study dysfunction of mesothelin-redirected CAR T cells in pancreatic cancer, we establish a robust model of continuous antigen exposure that recapitulates hallmark features of T cell exhaustion and discover, both in vitro and in CAR T cell patients, that CAR dysregulation is associated with a CD8+ T-to-NK-like T cell transition. Furthermore, we identify a gene signature defining CAR and TCR dysregulation and transcription factors, including SOX4 and ID3 as key regulators of CAR T cell exhaustion. Our findings shed light on the plasticity of human CAR T cells and demonstrate that genetic downmodulation of ID3 and SOX4 expression can improve the efficacy of CAR T cell therapy in solid tumors by preventing or delaying CAR T cell dysfunction.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CAR T cell; ID3; NK-like T cell; SOX4; T cell dysfunction; T cell exhaustion; cancer; cell transfer therapy; immunology; immunotherapy; pancreatic cancer; single-cell RNA-seq

Mesh:

Substances:

Year:  2021        PMID: 34861191      PMCID: PMC8827167          DOI: 10.1016/j.cell.2021.11.016

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   66.850


  78 in total

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Journal:  Nat Protoc       Date:  2014-01-02       Impact factor: 13.491

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Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

3.  The transcriptional regulators Id2 and Id3 control the formation of distinct memory CD8+ T cell subsets.

Authors:  Cliff Y Yang; J Adam Best; Jamie Knell; Edward Yang; Alison D Sheridan; Adam K Jesionek; Haiyan S Li; Richard R Rivera; Kristin Camfield Lind; Louise M D'Cruz; Stephanie S Watowich; Cornelis Murre; Ananda W Goldrath
Journal:  Nat Immunol       Date:  2011-11-06       Impact factor: 25.606

4.  Chimeric Antigen Receptor Designed to Prevent Ubiquitination and Downregulation Showed Durable Antitumor Efficacy.

Authors:  Wentao Li; Shizhen Qiu; Jian Chen; Shutan Jiang; Wendong Chen; Jingwei Jiang; Fei Wang; Wen Si; Yilai Shu; Ping Wei; Gaofeng Fan; Ruijun Tian; Haitao Wu; Chenqi Xu; Haopeng Wang
Journal:  Immunity       Date:  2020-08-05       Impact factor: 31.745

5.  Human antimicrobial cytotoxic T lymphocytes, defined by NK receptors and antimicrobial proteins, kill intracellular bacteria.

Authors:  Samuel J Balin; Matteo Pellegrini; Eynav Klechevsky; Sohui T Won; David I Weiss; Aaron W Choi; Joshua Hakimian; Jing Lu; Maria Teresa Ochoa; Barry R Bloom; Lewis L Lanier; Steffen Stenger; Robert L Modlin
Journal:  Sci Immunol       Date:  2018-08-31

6.  Targeting Tim-3 and PD-1 pathways to reverse T cell exhaustion and restore anti-tumor immunity.

Authors:  Kaori Sakuishi; Lionel Apetoh; Jenna M Sullivan; Bruce R Blazar; Vijay K Kuchroo; Ana C Anderson
Journal:  J Exp Med       Date:  2010-09-06       Impact factor: 14.307

7.  Integrating single-cell transcriptomic data across different conditions, technologies, and species.

Authors:  Andrew Butler; Paul Hoffman; Peter Smibert; Efthymia Papalexi; Rahul Satija
Journal:  Nat Biotechnol       Date:  2018-04-02       Impact factor: 54.908

8.  4-1BB costimulation ameliorates T cell exhaustion induced by tonic signaling of chimeric antigen receptors.

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Journal:  Nat Med       Date:  2015-05-04       Impact factor: 53.440

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

Review 10.  Anti-NKG2A mAb Is a Checkpoint Inhibitor that Promotes Anti-tumor Immunity by Unleashing Both T and NK Cells.

Authors:  Pascale André; Caroline Denis; Caroline Soulas; Clarisse Bourbon-Caillet; Julie Lopez; Thomas Arnoux; Mathieu Bléry; Cécile Bonnafous; Laurent Gauthier; Ariane Morel; Benjamin Rossi; Romain Remark; Violette Breso; Elodie Bonnet; Guillaume Habif; Sophie Guia; Ana Ines Lalanne; Caroline Hoffmann; Olivier Lantz; Jérôme Fayette; Agnès Boyer-Chammard; Robert Zerbib; Pierre Dodion; Hormas Ghadially; Maria Jure-Kunkel; Yannis Morel; Ronald Herbst; Emilie Narni-Mancinelli; Roger B Cohen; Eric Vivier
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

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  23 in total

1.  Novel acetylation-related gene signatures for predicting the prognosis of patients with colorectal cancer.

Authors:  Zhuang Jing; Feng Ziwang; Wu Yinhang; Zhou Yani; Chu Jian; Wu Jingwen; Han Shuwen
Journal:  Hum Cell       Date:  2022-05-23       Impact factor: 4.174

Review 2.  Future development of chimeric antigen receptor T cell therapies for patients suffering from malignant glioma.

Authors:  Payal B Watchmaker; Maggie Colton; Psalm L Pineo-Cavanaugh; Hideho Okada
Journal:  Curr Opin Oncol       Date:  2022-07-19       Impact factor: 3.915

3.  Common Trajectories of Highly Effective CD19-Specific CAR T Cells Identified by Endogenous T-cell Receptor Lineages.

Authors:  Taylor L Wilson; Hyunjin Kim; Ching-Heng Chou; Deanna Langfitt; Robert C Mettelman; Anastasia A Minervina; E Kaitlynn Allen; Jean-Yves Métais; Mikhail V Pogorelyy; Janice M Riberdy; M Paulina Velasquez; Pratibha Kottapalli; Sanchit Trivedi; Scott R Olsen; Timothy Lockey; Catherine Willis; Michael M Meagher; Brandon M Triplett; Aimee C Talleur; Stephen Gottschalk; Jeremy Chase Crawford; Paul G Thomas
Journal:  Cancer Discov       Date:  2022-09-02       Impact factor: 38.272

4.  KIR-based inhibitory CARs overcome CAR-NK cell trogocytosis-mediated fratricide and tumor escape.

Authors:  Ye Li; Rafet Basar; Guohui Wang; Enli Liu; Judy S Moyes; Li Li; Lucila N Kerbauy; Nadima Uprety; Mohsen Fathi; Ali Rezvan; Pinaki P Banerjee; Luis Muniz-Feliciano; Tamara J Laskowski; Emily Ensley; May Daher; Mayra Shanley; Mayela Mendt; Sunil Acharya; Bin Liu; Alexander Biederstädt; Hind Rafei; Xingliang Guo; Luciana Melo Garcia; Paul Lin; Sonny Ang; David Marin; Ken Chen; Laura Bover; Richard E Champlin; Navin Varadarajan; Elizabeth J Shpall; Katayoun Rezvani
Journal:  Nat Med       Date:  2022-09-29       Impact factor: 87.241

Review 5.  Clinical implications of T cell exhaustion for cancer immunotherapy.

Authors:  Andrew Chow; Karlo Perica; Christopher A Klebanoff; Jedd D Wolchok
Journal:  Nat Rev Clin Oncol       Date:  2022-10-10       Impact factor: 65.011

6.  Post-infusion CAR TReg cells identify patients resistant to CD19-CAR therapy.

Authors:  Zinaida Good; Jay Y Spiegel; Bita Sahaf; Meena B Malipatlolla; Zach J Ehlinger; Sreevidya Kurra; Moksha H Desai; Warren D Reynolds; Anita Wong Lin; Panayiotis Vandris; Fang Wu; Snehit Prabhu; Mark P Hamilton; John S Tamaresis; Paul J Hanson; Shabnum Patel; Steven A Feldman; Matthew J Frank; John H Baird; Lori Muffly; Gursharan K Claire; Juliana Craig; Katherine A Kong; Dhananjay Wagh; John Coller; Sean C Bendall; Robert J Tibshirani; Sylvia K Plevritis; David B Miklos; Crystal L Mackall
Journal:  Nat Med       Date:  2022-09-12       Impact factor: 87.241

Review 7.  Epigenetic regulation of T cell exhaustion.

Authors:  Julia A Belk; Bence Daniel; Ansuman T Satpathy
Journal:  Nat Immunol       Date:  2022-05-27       Impact factor: 31.250

8.  Potentiating adoptive cell therapy using synthetic IL-9 receptors.

Authors:  Anusha Kalbasi; Mikko Siurala; Leon L Su; Mito Tariveranmoshabad; Lora K Picton; Pranali Ravikumar; Peng Li; Jian-Xin Lin; Helena Escuin-Ordinas; Tong Da; Sarah V Kremer; Amy L Sun; Sofia Castelli; Sangya Agarwal; John Scholler; Decheng Song; Philipp C Rommel; Enrico Radaelli; Regina M Young; Warren J Leonard; Antoni Ribas; Carl H June; K Christopher Garcia
Journal:  Nature       Date:  2022-06-08       Impact factor: 69.504

9.  EZH1 repression generates mature iPSC-derived CAR T cells with enhanced antitumor activity.

Authors:  Ran Jing; Irene Scarfo; Mohamad Ali Najia; Edroaldo Lummertz da Rocha; Areum Han; Michael Sanborn; Trevor Bingham; Caroline Kubaczka; Deepak K Jha; Marcelo Falchetti; Thorsten M Schlaeger; Trista E North; Marcela V Maus; George Q Daley
Journal:  Cell Stem Cell       Date:  2022-08-04       Impact factor: 25.269

10.  Next-Generation CAR T-cell Therapies.

Authors:  Regina M Young; Nils W Engel; Ugur Uslu; Nils Wellhausen; Carl H June
Journal:  Cancer Discov       Date:  2022-07-06       Impact factor: 38.272

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