| Literature DB >> 34860240 |
Tianchang Tao1,2,3, Ningda Xu1,2,3, Jiarui Li1,2,3, Hongyan Li1,2,3, Jinfeng Qu1,2,3, Hong Yin1,2,3, Jianhong Liang1,2,3, Mingwei Zhao1,2,3, Xiaoxin Li1,2,3,4, Lvzhen Huang1,2,3.
Abstract
Purpose: To investigate the clinical findings in Chinese patients diagnosed with familial exudative vitreoretinopathy (FEVR) and carrying pathogenic mutations.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34860240 PMCID: PMC8648064 DOI: 10.1167/iovs.62.15.4
Source DB: PubMed Journal: Invest Ophthalmol Vis Sci ISSN: 0146-0404 Impact factor: 4.799
Figure 1.Mutation spectrum of FZD4, LRP4, NDP, TSPAN12, KIF11, and ZNF408 in 120 Chinese patients with FEVR.
Identified Variants in FZD4 Gene of Patients With FEVR
| Patient ID | Sex | Age | Stage (OD/OS) | Gene | Nucleotide Changes | Protein Changes | SIFT | PP-2 | MT | ACMG | ExAC | gnomAD | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P01 | F | 9 | 4/4 |
| c.40_49delCCCGGGGGCG | p.P14Sfs*44 | – | – | DC | P | – | 0.00000426 | Reported |
| P02 | F | 7 | 4/5 |
| c.42_43delCG | p.G16Rfs*113 | – | – | DC | P | – | – | Novel |
|
| c.1300A>G | p.M434V | D | PbD | DC | LP | – | – | Novel | ||||
| P03 | M | 10 | 4/4 |
| c.205C>T | p.H69Y | D | B | DC | U | 0.00056200 | 0.00022400 | Reported |
| P04 | F | 16 | 1/1 | ||||||||||
| P05 | M | 9 | 4/3 | ||||||||||
| P06 | M | 12 | 2/2 | ||||||||||
| P07 | M | 23 | 4/1 | ||||||||||
| P08 | M | 14 | 4/2 |
| c.313A>G | p.M105V | T | PsD | DC | LP | 0.00001670 | 0.00002400 | Reported |
| P09 | M | 16 | 4/4 | ||||||||||
| P10 | M | 15 | 4/4 |
| c.341T>C | p.I114T | D | PsD | DC | LP | – | – | Reported |
| P11 | M | 16 | 4/4 |
| c.631T>C | p.Y211H | D | B | DC | U | – | 0.00002390 | Novel |
|
| c.1030A>C | p.S344R | D | PbD | DC | U | – | – | Novel | ||||
|
| c.1031G>C | p.S344T | D | PbD | DC | U | – | – | Novel | ||||
| P12 | M | 12 | 2/2 |
| c.684C>A | p.S228R | D | PsD | DC | LP | – | – | Novel |
| P13 | M | 5 | Normal eye/4 |
| c.686T>C | p.L229P | D | PbD | DC | LP | – | – | Reported |
| P14 | F | 6 | 4/4 |
| c.694A>G | p.I232V | T | B | DC | U | – | – | Novel |
| P15 | M | 10 | 4/5 |
| c.733T>A | p.S245T | T | B | DC | U | – | – | Novel |
| P16 | F | 11 | 1/3 |
| c.807T>G | p.Y269* | – | – | DC | LP | – | – | Novel |
| P17 | M | 8 | 5/5 |
| c.877A>G | p.I293V | T | B | DC | LP | – | – | Novel |
| P18 | F | 16 | 4/4 |
| c.983T>C | p.F328S | D | PbD | DC | U | – | – | Novel |
| P19 | M | 10 | 3/4 |
| c.1282_1285delGACA | p.D428Sfs*2 | – | – | DC | P | 0.00000824 | 0.00001060 | Reported |
| P20 | M | 9 | 5/5 | ||||||||||
| P21 | F | 11 | Artificial eye/5 | ||||||||||
| P22 | M | 9 | 5/1 |
| c.1328T>C | p.L443P | D | PbD | DC | U | – | – | Novel |
| P23 | M | 12 | 5/2 |
| c.1387delG | p.A463Hfs*17 | – | – | DC | LP | – | – | Novel |
| P24 | F | 11 | 1/5 |
| c.1482G>A | p.W494* | – | – | DC | LP | – | – | Novel |
| P25 | M | 16 | 1/5 |
| c.1502T>C | p.L501P | D | PbD | DC | U | – | – | Novel |
ACMG, American College of Medical Genetics and Genomics; B, benign; D, damaging; DC, disease causing; LP, likely pathogenic; MT, mutation taster; PbD, probably damaging; Pm, polymorphism; PP-2, Polyphen-2; P, pathogenic; PsD, possibly damaging; T, tolerated; U, uncertain.
Identified Variants in LRP5 Gene of Patients With FEVR
| Patient ID | Sex | Age | Stage (OD/OS) | Gene | Nucleotide Changes | Protein Changes | SIFT | PP-2 | MT | ACMG | ExAC | gnomAD | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P29 | M | 40 | 4/4 |
| c.55_60dupCTGCTG | p.19_20dupLL | – | – | Pm | U | 0.00218000 | 0.00125000 | Reported |
| P30 | M | 8 | 2/4 | ||||||||||
| P26 | F | 10 | 4/4 |
| c.55_60dupCTGCTG | p.19_20dupLL | – | – | Pm | U | 0.00218000 | 0.00125000 | Reported |
|
| c.1294T>G | p.W432G | D | PbD | DC | LP | – | – | Novel | ||||
| P27 | M | 13 | 2/4 |
| c.58_60dupCTG | p.20dupL | – | – | Pm | B | 0.15300000 | 0.08750000 | Reported |
| P28 | M | 7 | 2/2 |
| c.58_60dupCTG | p.20dupL | – | – | Pm | B | 0.15300000 | 0.08750000 | Reported |
|
| c.3246C>G | p.Y1082 | – | – | DC | LP | – | – | Novel | ||||
| P31 | M | 9 | 5/5 |
| c.107T>C | p.L36P | D | PbD | DC | LP | – | – | Novel |
| P32 | M | 8 | 5/5 |
| c.235T>G | p.W79G | D | PbD | DC | LP | – | – | Novel |
| P33 | M | 5 | 3/4 |
| c.280C>A | p.Q94K | T | B | DC | U | – | – | Novel |
| P34 | M | 13 | 4/4 |
| c.542T>C | p.M181T | D | PbD | DC | LP | – | – | Novel |
| P35 | M | 26 | 5/5 |
| c.676G>A | p.G226S | D | PbD | DC | LP | – | – | Novel |
|
| c.1123G>A | p.A375T | D | PsD | DC | LP | 0.00002480 | 0.00000796 | Reported | ||||
| P36 | F | 10 | 4/4 |
| c.1057C>T | p.R353W | D | PbD | DC | LP | 0.00001670 | 0.00000399 | Novel |
| P37 | F | 10 | 5/5 |
| c.1133T>C | p.I378T | D | PsD | DC | LP | – | – | Novel |
|
| c.2422G>A | p.D808N | D | PsD | DC | LP | 0.00000832 | 0.00000399 | Novel | ||||
| P38 | M | 7 | 4/5 |
| c.1145C>T | p.P382L | D | PbD | DC | P | – | 0.00000398 | Reported |
|
| c.1364C>T | p.S455L | T | PbD | DC | P | – | 0.00000401 | Reported | ||||
| P39 | M | 9 | 5/5 |
| c.1148T>C | p.L383P | D | PsD | DC | LP | – | – | Novel |
|
| c.4105_4106delAT | p.M1369Vfs*2 | – | – | DC | LP | 0.00000826 | 0.00000399 | Novel | ||||
| P40 | M | 15 | 4/4 |
| c.1199C>T | p.A400V | T | B | DC | U | 0.00029800 | 0.00013800 | Novel |
| P41 | M | 8 | 4/5 |
| c.1330C>T | p.R444C | D | PsD | DC | LP | 0.00002500 | 0.00000657 | Reported |
| P42 | M | 10 | 3/4 | ||||||||||
| P43 | F | 10 | 4/4 |
| c.1349G>A | p.R450H | D | PbD | DC | P | – | 0.00000400 | Reported |
|
| c.3245A>G | p.Y1082C | D | PbD | DC | LP | 0.00008340 | 0.00007480 | Novel | ||||
| P44 | M | 8 | 5/5 |
| c.1385G>A | p.R462Q | D | PbD | DC | U | 0.00000848 | 0.00000804 | Novel |
| P45 | M | 7 | 3/2 |
| c.2237G>A | p.R746Q | D | PbD | DC | LP | 0.00003320 | 0.00000657 | Reported |
| P46 | M | 6 | 4/4 |
| c.2488T>C | p.S830P | D | PbD | DC | LP | – | Novel | |
|
| c.479C>T | p.P160L | D | PbD | DC | LP | 0.00000848 | 0.00000413 | Novel | ||||
| P62 | F | 7 | 1/1 |
| c.2512C>T | p.R838W | D | PbD | DC | U | 0.00000828 | 0.00000803 | Novel |
| P47 | M | 7 | 4/4 |
| c.2555C>T | p.T852M | D | PbD | DC | LP | – | 0.00001310 | Reported |
| P48 | F | 8 | 2/5 |
| c.3237–2A>G | – | – | – | – | U | – | – | Novel |
| P49 | M | 7 | 4/Normal eye |
| c.3361A>G | p.N1121D | T | B | DC | LP | 0.00066500 | 0.00039500 | Reported |
| P50 | M | 7 | 2/1 |
| c.3901G>A | p.A1301T | T | B | Pm | U | 0.00018500 | 0.00013100 | Novel |
| P51 | M | 14 | 4/4 |
| c.4488+5G>C | – | – | – | – | U | – | – | Novel |
| P52 | M | 11 | 5/5 |
| c.4600C>T | p.R1534 | – | – | DC | P | – | – | Novel |
| P53, | M | 11 | 4/4 |
| c.4643G>T | p.C1548F | D | PbD | DC | LP | 0.00028400 | 0.00019700 | Reported |
| P54 | M | 10 | 2/4 | ||||||||||
| P55 | F | 10 | 4/4 |
| c.4670G>A | p.W1557* | – | – | DC | P | – | – | Novel |
|
| c.1378G>A | p.E460K | D | PbD | DC | P | – | 0.00000657 | Reported |
ACMG, American College of Medical Genetics and Genomics; B, benign; D, damaging; DC, disease causing; LP, likely pathogenic; MT, mutation taster; PbD, probably damaging; Pm, polymorphism; PP-2, Polyphen-2; P, pathogenic; PsD, possibly damaging; T, tolerated; U, uncertain.
P26 inherited the mutation c.55_60dupCTGCTG; p.19_20dupLL from her father, who had no signs of FEVR, the c.1294T>G; p.W432G was inherited from her mother, whose information was unavailable.
P28 inherited the mutation c.58_60dupCTG; p.20dupLL from his father, and the mutation c.3246C>G; p.Y1082* was inherited from his mother; neither parent had signs of FEVR.
P35 inherited the mutation c.676G>A; p.G226S from his father, and inherited the mutation c.1123G>A; p.A375T from his mother; neither parent had signs of FEVR.
P37 inherited the mutation c.1133T>C; p.I378T from her father, and inherited the mutation c.2422G>A; p.D808N from her mother, neither parents had signs of FEVR.
P38 inherited the mutation c.1364C>T; p.S455L from his father, and inherited the mutation c.1145C>T; p.P382L from his mother; neither parent had signs of FEVR.
P39 inherited the mutation c.4105_4106delAT; p.M1369Vfs*2 from his father, who had no signs of FEVR, the c.1148T>C; p.L383P was inherited from his mother, who had stage 1 of FEVR.
P43 inherited the mutation c.1349G>A; p.R450H from her father, and inherited the mutation c.3245A>G; p.Y1082C from her mother; neither parent had signs of FEVR.
P46 inherited the mutation c.479C>T; p.P160L from his father, and inherited the mutation c.2488T>C; p.S830P from his mother; neither parent had signs of FEVR.
P55 inherited the mutation c.1378G>A; p.E460K from her father, and inherited the mutation c.4670G>A; p.W1557* from her mother; neither parent had signs of FEVR.
Identified Variants in NDP, TSPAN12, KIF11, and ZNF408 Genes of Patients With FEVR
| Patient ID | Sex | Age | Stage (OD/OS) | Gene | Nucleotide Changes | Protein Changes | SIFT | PP-2 | MT | ACMG | ExAC | gnomAD | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P56 | M | 22 | 4/4 |
| c.22G>C | p.A8P | D | PbD | DC | LP | – | – | Reported |
| P57 | M | 4 | 5/5 |
| c.239_241delCGT | p.80_81delSF | – | – | DC | LP | – | – | Novel |
| P58 | M | 4 | 4/4 |
| c.268C>T | p.R90C | D | PbD | DC | LP | – | – | Reported |
| P59 | M | 4 | 4/4 |
| c.325C>T | p.R109* | – | – | DC | P | – | – | Reported |
| P60 | M | 6 | 5/5 |
| c.343C>T | p.R115* | – | – | DC | P | – | – | Reported |
| P61 | M | 9 | 5/5 |
| c.358T>G | p.Y120D | D | PbD | DC | U | – | – | Novel |
| P63 | M | 9 | 5/5 |
| c.384C>A | p.128C* | – | – | DC | P | – | – | Reported |
| P64 | M | 12 | 2/2 |
| c.388G>T | p.E130* | – | – | DC | LP | – | – | Novel |
| P65 | M | 12 | 5/5 |
| c.95delC | p.S32Lfs*4 | – | – | DC | LP | – | – | Novel |
| P66 | F | 33 | 2/1 |
| c.194C>T | p.P65L | T | B | DC | LP | – | 0.00000658 | Reported |
| P67 | F | 10 | 4/4 |
| c.232G>A | p.G78R | D | PbD | DC | LP | – | – | Novel |
| P68 | M | 10 | 4/4 |
| c.352G>T | p.E118* | – | – | DC | P | – | – | Reported |
| P69 | F | 10 | 4/Normal eye |
| c.361–2A>G | – | – | – | – | P | – | – | Novel |
| P70 | M | 8 | 5/5 |
| c.559C>A | p.P187T | T | B | DC | U | – | – | Novel |
| P71 | M | 12 | 5/5 |
| c.617G>T | p.C206F | D | PbD | DC | U | – | – | Novel |
| P72 | F | 13 | 1/4 |
| c.689T>A | p.I230N | D | PbD | DC | LP | – | – | Novel |
| P73 | M | 4 | 4/4 |
| c.689T>C | p.I230T | D | PbD | DC | U | 0.00002470 | 0.00002630 | Novel |
| P74 | F | 6 | 4/4 |
| c.738G>A | p.W246* | – | – | DC | LP | – | – | Novel |
| P75, | M | 16 | 1/4 |
| c.765G>T | p.P255P | T | – | Pm | B | 0.80300000 | 0.00000658 | Reported |
| P76 | F | 6 | 2/1 | ||||||||||
| P77 | M | 4 | 4/4 |
| c.308+1G>A | – | – | – | – | P | – | – | Reported |
| P78 | M | 8 | 2/2 |
| c.388–2A>G | – | – | – | – | U | – | – | Novel |
| P79 | M | 4 | 4/4 |
| c.1349_1353delGTAAA | p.C450Ffs*2 | – | – | DC | P | – | – | Novel |
| P80 | M | 7 | 2/3 |
| c.2268–4A>G | – | – | – | – | U | – | 0.00000657 | Novel |
| P81 | M | 5 | 3/4 |
| c.1102C>A | p.L368I | D | PbD | DC | U | – | – | Novel |
ACMG, American College of Medical Genetics and Genomics; B, benign; D, damaging; DC, disease causing; LP, likely pathogenic; MT, mutation taster; PbD, probably damaging; Pm, polymorphism; PP-2, Polyphen-2; P, pathogenic; PsD, possibly damaging; T, tolerated; U, uncertain.
Patients at Five Different Stages of FEVR in Different Gene Groups
| Stage | Total |
|
|
|
|
|
| Number With Identified Mutation |
|---|---|---|---|---|---|---|---|---|
| 1 | 4 | 1 | 1 | 0 | 0 | 0 | 0 | 2 (50.00%) |
| 2 | 11 | 2 | 2 | 1 | 2 | 1 | 0 | 8 (72.73%) |
| 3 | 4 | 1 | 1 | 0 | 0 | 1 | 0 | 3 (75.00%) |
| 4 | 56 | 12 | 17 | 3 | 7 | 2 | 1 | 42 (75.00%) |
| 5 | 45 | 9 | 10 | 4 | 3 | 0 | 0 | 26 (57.78%) |
| Total | 120 | 25 | 31 | 8 | 12 | 4 | 1 | 81 (67.50%) |
The severity of patients was determined by the highest stage of FEVR in either eye.
Figure 2.Ophthalmic examinations of four probands who carried four FZD4 mutations c.1328T>C; p.L443P, c.1387delG; p.A463Hfs*17, c.1482G>A; p.W494*, and c.1502T>C; p.L501P. (A, B) Ocular B-scan ultrasound and color fundus photography (CFP) showed the stage 5 of right eye and the stage 1 of left eye in P22 respectively. (C, D) CFP showed the stage 5 of right eye and the stage 2 of left eye in P23. (E, F) CFP showed the stage 1 of right eye and the stage 5 of left eye in P24. (G, H) CFP showed the stage 1 of right eye and the stage 5 of left eye in P25.