Literature DB >> 34836462

A Systematic Review of Published Physiologically-based Kinetic Models and an Assessment of their Chemical Space Coverage.

Courtney V Thompson1, James W Firman1, Michael R Goldsmith2, Christopher M Grulke2, Yu-Mei Tan3, Alicia Paini4, Peter E Penson1, Risa R Sayre2, Steven Webb5, Judith C Madden1.   

Abstract

Across multiple sectors, including food, cosmetics and pharmaceutical industries, there is a need to predict the potential effects of xenobiotics. These effects are determined by the intrinsic ability of the substance, or its derivatives, to interact with the biological system, and its concentration-time profile at the target site. Physiologically-based kinetic (PBK) models can predict organ-level concentration-time profiles, however, the models are time and resource intensive to generate de novo. Read-across is an approach used to reduce or replace animal testing, wherein information from a data-rich chemical is used to make predictions for a data-poor chemical. The recent increase in published PBK models presents the opportunity to use a read-across approach for PBK modelling, that is, to use PBK model information from one chemical to inform the development or evaluation of a PBK model for a similar chemical. Essential to this process, is identifying the chemicals for which a PBK model already exists. Herein, the results of a systematic review of existing PBK models, compliant with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) format, are presented. Model information, including species, sex, life-stage, route of administration, software platform used and the availability of model equations, was captured for 7541 PBK models. Chemical information (identifiers and physico-chemical properties) has also been recorded for 1150 unique chemicals associated with these models. This PBK model data set has been made readily accessible, as a Microsoft Excel® spreadsheet, providing a valuable resource for those developing, using or evaluating PBK models in industry, academia and the regulatory sectors.

Entities:  

Keywords:  PBK; PBPK; PBTK; pharmacokinetic modelling; read-across; systematic review

Mesh:

Year:  2021        PMID: 34836462      PMCID: PMC8764633          DOI: 10.1177/02611929211060264

Source DB:  PubMed          Journal:  Altern Lab Anim        ISSN: 0261-1929            Impact factor:   1.303


  19 in total

Review 1.  Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings.

Authors:  C A Lipinski; F Lombardo; B W Dominy; P J Feeney
Journal:  Adv Drug Deliv Rev       Date:  2001-03-01       Impact factor: 15.470

2.  A strategy for structuring and reporting a read-across prediction of toxicity.

Authors:  T W Schultz; P Amcoff; E Berggren; F Gautier; M Klaric; D J Knight; C Mahony; M Schwarz; A White; M T D Cronin
Journal:  Regul Toxicol Pharmacol       Date:  2015-05-21       Impact factor: 3.271

3.  Finding synergies for 3Rs - Toxicokinetics and read-across: Report from an EPAA partners' Forum.

Authors:  Charles Laroche; Manoj Aggarwal; Hans Bender; Paul Benndorf; Barbara Birk; Jonathan Crozier; Gianni Dal Negro; Federica De Gaetano; Christian Desaintes; Iain Gardner; Bruno Hubesch; Amaia Irizar; David John; Vikas Kumar; Alfonso Lostia; Irene Manou; Mario Monshouwer; Boris P Müller; Alicia Paini; Kirsty Reid; Timothy Rowan; Magdalini Sachana; Katrin Schutte; Catrina Stirling; Rob Taalman; Leon van Aerts; Renate Weissenhorn; Ursula G Sauer
Journal:  Regul Toxicol Pharmacol       Date:  2018-08-23       Impact factor: 3.271

Review 4.  A Review of In Silico Tools as Alternatives to Animal Testing: Principles, Resources and Applications.

Authors:  Judith C Madden; Steven J Enoch; Alicia Paini; Mark T D Cronin
Journal:  Altern Lab Anim       Date:  2020-10-29       Impact factor: 1.303

5.  Application of structural and functional pharmacokinetic analogs for physiologically based pharmacokinetic model development and evaluation.

Authors:  Corie A Ellison; Shengde Wu
Journal:  Regul Toxicol Pharmacol       Date:  2020-05-05       Impact factor: 3.271

Review 6.  Challenges Associated With Applying Physiologically Based Pharmacokinetic Modeling for Public Health Decision-Making.

Authors:  Yu-Mei Tan; Rachel R Worley; Jeremy A Leonard; Jeffrey W Fisher
Journal:  Toxicol Sci       Date:  2018-04-01       Impact factor: 4.849

7.  Assessment of the predictive capacity of a physiologically based kinetic model using a read-across approach.

Authors:  Alicia Paini; Andrew Worth; Sunil Kulkarni; David Ebbrell; Judith Madden
Journal:  Comput Toxicol       Date:  2021-05

8.  Database of pharmacokinetic time-series data and parameters for 144 environmental chemicals.

Authors:  Risa R Sayre; John F Wambaugh; Christopher M Grulke
Journal:  Sci Data       Date:  2020-04-20       Impact factor: 6.444

9.  Investigating the state of physiologically based kinetic modelling practices and challenges associated with gaining regulatory acceptance of model applications.

Authors:  Alicia Paini; Jeremy A Leonard; Tomas Kliment; Yu-Mei Tan; Andrew Worth
Journal:  Regul Toxicol Pharmacol       Date:  2017-09-01       Impact factor: 3.271

Review 10.  Utilization of Physiologically Based Pharmacokinetic Modeling in Clinical Pharmacology and Therapeutics: an Overview.

Authors:  Courtney Perry; Grace Davis; Todd M Conner; Tao Zhang
Journal:  Curr Pharmacol Rep       Date:  2020-05-12
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  2 in total

1.  Towards best use and regulatory acceptance of generic physiologically based kinetic (PBK) models for in vitro-to-in vivo extrapolation (IVIVE) in chemical risk assessment.

Authors:  Abdulkarim Najjar; Ans Punt; John Wambaugh; Alicia Paini; Corie Ellison; Styliani Fragki; Enrica Bianchi; Fagen Zhang; Joost Westerhout; Dennis Mueller; Hequn Li; Quan Shi; Timothy W Gant; Phil Botham; Rémi Bars; Aldert Piersma; Ben van Ravenzwaay; Nynke I Kramer
Journal:  Arch Toxicol       Date:  2022-09-05       Impact factor: 6.168

2.  A permeability- and perfusion-based PBPK model for improved prediction of concentration-time profiles.

Authors:  Ken Korzekwa; Casey Radice; Swati Nagar
Journal:  Clin Transl Sci       Date:  2022-05-31       Impact factor: 4.438

  2 in total

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