Literature DB >> 34826593

Combination of high throughput and structural screening to assess protein stability - A screening perspective.

Christin Pohl1, Sujata Mahapatra2, Alina Kulakova3, Werner Streicher4, Günther H J Peters5, Allan Nørgaard4, Pernille Harris6.   

Abstract

High throughput screening for measuring the stability of industrially relevant proteins and their variants is necessary for quality assessment in the development process. Advances in automation, measurement time and sample consumption for many techniques allow rapid measurements with minimal amount of protein. However, many methods include automated data analysis, potentially neglecting important aspects of the protein's behavior in certain conditions. In this study we implement small angle X-ray scattering (SAXS), typically not used to assess protein behavior in industrial screening, in a high throughput screening workflow to address problems of contradicting results and reproducibility among different high throughput methods. As a case study we use the lipases of Thermomyces lanuginosus and Rhizomucor miehei, widely used industrial biocatalysts. We show that even the initial analysis of the SAXS data without performing any time-consuming modelling provide valuable information on interparticle interactions. We conclude that recent advances in automation and data processing, have enabled SAXS to be used more widely as a tool to gain in-depth knowledge highly useful for protein formulation development. This is especially relevant in light of increasing accessibility to SAXS due to the commercial availability of benchtop instruments.
Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Drug screening; High throughput screening; Protein aggregation; Protein engineering; Protein stability; Protein–protein interaction; Small-angle X-ray scattering (SAXS)

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Year:  2021        PMID: 34826593     DOI: 10.1016/j.ejpb.2021.08.018

Source DB:  PubMed          Journal:  Eur J Pharm Biopharm        ISSN: 0939-6411            Impact factor:   5.571


  2 in total

1.  Electrostatics Drive Oligomerization and Aggregation of Human Interferon Alpha-2a.

Authors:  Christin Pohl; Marco Polimeni; Sowmya Indrakumar; Werner Streicher; Günther H J Peters; Allan Nørgaard; Mikael Lund; Pernille Harris
Journal:  J Phys Chem B       Date:  2021-12-13       Impact factor: 2.991

2.  Investigation of the pH-dependent aggregation mechanisms of GCSF using low resolution protein characterization techniques and advanced molecular dynamics simulations.

Authors:  Suk Kyu Ko; Carolin Berner; Alina Kulakova; Markus Schneider; Iris Antes; Gerhard Winter; Pernille Harris; Günther H J Peters
Journal:  Comput Struct Biotechnol J       Date:  2022-03-17       Impact factor: 7.271

  2 in total

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