| Literature DB >> 34820455 |
Rui Chai1, Qi Wang1, Pinle Qin1, Jianchao Zeng1, Jiwei Ren2, Ruiping Zhang2, Lin Chu2, Xuting Zhang2, Yun Guan1.
Abstract
OBJECTIVES: To evaluate the utility of radiomics features in differentiating central lung cancers and atelectasis on contrast-enhanced computed tomography (CT) images. This study is retrospective.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34820455 PMCID: PMC8608546 DOI: 10.1155/2021/5522452
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Population's characteristics.
| Characteristics | Values |
|---|---|
| Mean age | 61.30 ± 7.66 |
| Age range | 43 to 73 |
| Sex ratio∗ | 4 : 32 |
| Total patients | 36 |
∗Indicates the ratio of women to men.
Figure 13D Slicer software interface.
Figure 2An example of data and masks. (b, c, d) Red indicates tumor, green indicates atelectasis. (a) Original image. (b) Contours of tumor and atelectasis drawn by the physicians. (c) The masks generated from the contour. (d) 3D masks reconstructed from the 2D mask sequence.
Image transformation operations.
| Transformation | Feature maps |
|---|---|
| Original | Original image |
| Wavelet | Wavelet decomposition subband∗ |
| Log | Log processing results∗∗ |
| Square | Square image |
| Square root | Square root image |
| Logarithm | Logarithm image |
| Exponential | Exponential image |
| Gradient | The gradient of the original image |
∗Enhanced CT image data has 3 dimensions, and each dimension has two options of low-pass wavelet convolution and high-pass wavelet convolution, so there are 8 subbands in total. ∗∗Set the value of σ of the Log operator to 0.01, 0.1, 0.5, 1.0, 2.0, 3.0, and 5.0 to get 7 different processing results.
Feature extraction operators.
| Group | Feature extractor |
|---|---|
| Shape | VoxelVolume |
| MeshVolume | |
| SurfaceArea | |
| SurfaceVolumeRatio | |
| Sphericity | |
| Max3DDiameter | |
| Max2DDiameterSlice | |
| Max2DDiameterColumn | |
| Max2DDiameterRow | |
| MajorAxisLength | |
| MinorAxisLength | |
| LeastAxisLength | |
| Elongation | |
| Flatness | |
|
| |
| Firstorder | Energy |
| TotalEnergy | |
| Entropy | |
| Min | |
| 10Percentile | |
| 90Percentile | |
| Max | |
| Mean | |
| Median | |
| InterquartileRange | |
| Range | |
| MAD | |
| RobustMAD | |
| RootMeanSquared | |
| Skewness | |
| Kurtosis | |
| Variance | |
| Uniformity | |
|
| |
| GLCM | Autocorrelation |
| JointAverage | |
| ClusterProminence | |
| ClusterShade | |
| ClusterTendency | |
| Contrast | |
| Correlation | |
| DifferenceAverage | |
| DifferenceEntropy | |
| DifferenceVariance | |
| JointEnergy | |
| JointEntropy | |
| Imc1 | |
| Imc2 | |
| Idm | |
| Idmn | |
| Id | |
| Idn | |
| InverseVariance | |
| MaxProbability | |
| MCC | |
| SumEntropy | |
| SumSquares | |
|
| |
| GLRLM | ShortRunE |
| LongRunE | |
| GrayLevelNU | |
| GrayLevelNUN | |
| RunLengthNU | |
| RunLengthNUN | |
| RunPercentage | |
| GrayLevelVariance | |
| RunVariance | |
| RunEntropy | |
| LowGrayLevelRunEntropy | |
| HighGrayLevelRunEntropy | |
| ShortRunLowGrayLevelEntropy | |
| ShortRunHighGrayLevelEntropy | |
| LongRunLowGrayLevelEntropy | |
| LongRunHighGrayLevelEntropy | |
|
| |
| GLSZM | SmallAreaE |
| LargeAreaE | |
| GrayLevelNU | |
| GrayLevelNUN | |
| SizeZoneNU | |
| SizeZoneNUN | |
| ZonePercentage | |
| GrayLevelVariance | |
| ZoneVariance | |
| ZoneEntropy | |
| LowGrayLevelZoneEntropy | |
| HighGrayLevelZoneEntropy | |
| SmallAreaLowGrayLevelEntropy | |
| SmallAreaHighGrayLevelEntropy | |
| LargeAreaLowGrayLevelEntropy | |
| LargeAreaHighGrayLevelEntropy | |
|
| |
| GLDM | SmallDE |
| LargeDE | |
| GrayLevelNU | |
| DNU | |
| DNUN | |
| GrayLevelVariance | |
| DVariance | |
| DEntropy | |
| LowGrayLevelEntropy | |
| HighGrayLevelEntropy | |
| SmallDLowGrayLevelEntropy | |
| SmallDHighGrayLevelEntropy | |
| LargeDLowGrayLevelEntropy | |
| LargeDHighGrayLevelEntropy | |
|
| |
| NGTDM | Coarseness |
| Contrast | |
| Busyness | |
| Complexity | |
Feature number under different threshold of information gain on 2D images.
| With shape features | Without shape features | |||||||
|---|---|---|---|---|---|---|---|---|
| LW | LW, N | EW | EW, N | LW | LW, N | EW | EW, N | |
| Total | 1,653 | 1,653 | 1,653 | 1,653 | 1,638 | 1,638 | 1,638 | 1,638 |
| 0 | 1,564 | 1,193 | 1,483 | 1,317 | 1,551 | 1,180 | 1,470 | 1,304 |
| 0.1 | 139 | 170 | 344 | 170 | 134 | 165 | 339 | 165 |
| 0.2 | 4 | 4 | 14 | 4 | 0 | 0 | 10 | 0 |
| 0.3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 0.4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 0.5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 0.6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
LW: lung window; EW: experience window; N: normalized.
Feature number under different threshold of information gain on 3D images.
| With shape features | Without shape features | |||||||
|---|---|---|---|---|---|---|---|---|
| LW | LW, N | EW | EW, N | LW | LW, N | EW | EW, N | |
| Total | 2,327 | 2,327 | 2,327 | 2,327 | 2,275 | 2,275 | 2,275 | 2,275 |
| 0 | 2,199 | 1,896 | 2,196 | 1,937 | 2,184 | 1,881 | 2,181 | 1,922 |
| 0.1 | 1,289 | 1,193 | 1,507 | 1,148 | 1,275 | 1,179 | 1,493 | 1,134 |
| 0.2 | 439 | 510 | 533 | 477 | 426 | 497 | 520 | 464 |
| 0.3 | 207 | 280 | 207 | 234 | 196 | 269 | 196 | 223 |
| 0.4 | 56 | 81 | 48 | 49 | 49 | 74 | 41 | 42 |
| 0.5 | 12 | 22 | 12 | 14 | 7 | 17 | 7 | 9 |
| 0.6 | 6 | 8 | 4 | 4 | 2 | 4 | 0 | 0 |
LW: lung window; EW: empirical window; N: normalized.
The classification model accuracy result.
| 2D | 3D | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| 0 | 0.1 | 0.2 | 0 | 0.1 | 0.2 | 0.3 | 0.4 | 0.5 | |
| Multilayer perceptron | 0.3995 | 0.7493 | 0.6866 | 0.3458 | 0.3972 | 0.3319 | 0.3625 | 0.6694 | 0.6763 |
| Decision tree | 0.7352 | 0.7484 | 0.7045 | 0.8055 | 0.8472 | 0.7916 | 0.8333 | 0.8333 | 0.9166 |
| Random forest | 0.7845 | 0.7924 | 0.7361 | 0.8041 | 0.8375 | 0.8305 | 0.8527 | 0.8958 | 0.9111 |
| AdaBoost | 0.8122 | 0.7825 | 0.7132 | 0.8736 | 0.8708 | 0.8805 | 0.8805 | 0.8916 | 0.9375 |
| Gradient boosting | 0.7814 | 0.7831 | 0.71 | 0.8291 | 0.818 | 0.8333 | 0.8055 | 0.8319 | 0.8694 |
| Bagging | 0.7911 | 0.8143 | 0.7442 | 0.8375 | 0.8597 | 0.8486 | 0.8625 | 0.8708 | 0.8902 |
| Bernoulli naive Bayes | 0.6604 | 0.6603 | 0.3232 | 0.4166 | 0.5138 | 0.5694 | 0.125 | 0.8333 | 0.4583 |
| Gaussian naive Bayes | 0.7937 | 0.6942 | 0.7437 | 0.6805 | 0.6944 | 0.6805 | 0.6805 | 0.875 | 0.9305 |
| Support vector machine | 0.1129 | 0.1184 | 0.6628 | 0 | 0 | 0 | 0 | 0 | 0.1527 |
|
| 0.498 | 0.7209 | 0.6616 | 0.625 | 0.625 | 0.625 | 0.625 | 0.7222 | 0.8333 |
The voxel classifier experiment results.
| DSC | HD | AC | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Tumor | Atelectasis | Average | Tumor | Atelectasis | Average | Tumor | Atelectasis | Average | |
| Decision tree | 0.1886 | 0.2267 | 0.20765 | 78.6 | 40.63 | 59.615 | 0.8688 | 0.8217 | 0.84525 |
| Random forest | 0.1397 | 0.2244 | 0.18205 | 54.35 | 36.21 | 45.28 | 0.8988 | 0.8363 | 0.86755 |
|
| 0.1383 | 0.2059 | 0.1721 | 57.73 | 37.92 | 47.825 | 0.8875 | 0.8245 | 0.856 |
| Gaussian naive Bayes | 0.1305 | 0.1639 | 0.1472 | 63.08 | 40.23 | 51.655 | 0.727 | 0.6842 | 0.7056 |