Literature DB >> 34813058

Synthetic DNA Libraries for Protein Engineering Toward Process Improvement in Drug Synthesis.

Michele Tavanti1,2.   

Abstract

Speeding-up enzyme engineering by directed evolution is a primary target to be achieved for a wider uptake of biocatalysis in pharmaceutical process development. The capability to rapidly generate the designed sequence diversity has profound implications in the overall optimization of protein function. Drawbacks associated with traditional PCR methods for sequence diversification interfere with the generation of all the variants that have been designed. On the contrary, the enhanced quality of synthetic DNA libraries makes the exploration of sequence space more efficient. Here, methods for the effective utilization of synthetic DNA libraries are described. The overall procedure allows the generation of ready-to-screen libraries within two weeks from synthetic DNA acquisition.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Combinatorial libraries; Directed evolution; Seamless cloning; Site-saturation mutagenesis; Synthetic DNA

Mesh:

Substances:

Year:  2022        PMID: 34813058     DOI: 10.1007/978-1-0716-1826-4_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  27 in total

1.  Genetically programmed chiral organoborane synthesis.

Authors:  S B Jennifer Kan; Xiongyi Huang; Yosephine Gumulya; Kai Chen; Frances H Arnold
Journal:  Nature       Date:  2017-11-29       Impact factor: 49.962

2.  Biocatalysis in the Pharmaceutical Industry: The Need for Speed.

Authors:  Matthew D Truppo
Journal:  ACS Med Chem Lett       Date:  2017-04-18       Impact factor: 4.345

Review 3.  Biocatalysis in drug discovery and development.

Authors:  Anna Fryszkowska; Paul N Devine
Journal:  Curr Opin Chem Biol       Date:  2020-03-10       Impact factor: 8.822

4.  Anti-Markovnikov alkene oxidation by metal-oxo-mediated enzyme catalysis.

Authors:  Stephan C Hammer; Grzegorz Kubik; Ella Watkins; Shan Huang; Hannah Minges; Frances H Arnold
Journal:  Science       Date:  2017-10-13       Impact factor: 47.728

5.  Design of an in vitro biocatalytic cascade for the manufacture of islatravir.

Authors:  Mark A Huffman; Anna Fryszkowska; Oscar Alvizo; Margie Borra-Garske; Kevin R Campos; Keith A Canada; Paul N Devine; Da Duan; Jacob H Forstater; Shane T Grosser; Holst M Halsey; Gregory J Hughes; Junyong Jo; Leo A Joyce; Joshua N Kolev; Jack Liang; Kevin M Maloney; Benjamin F Mann; Nicholas M Marshall; Mark McLaughlin; Jeffrey C Moore; Grant S Murphy; Christopher C Nawrat; Jovana Nazor; Scott Novick; Niki R Patel; Agustina Rodriguez-Granillo; Sandra A Robaire; Edward C Sherer; Matthew D Truppo; Aaron M Whittaker; Deeptak Verma; Li Xiao; Yingju Xu; Hao Yang
Journal:  Science       Date:  2019-12-06       Impact factor: 47.728

6.  Directed evolution of cytochrome c for carbon-silicon bond formation: Bringing silicon to life.

Authors:  S B Jennifer Kan; Russell D Lewis; Kai Chen; Frances H Arnold
Journal:  Science       Date:  2016-11-25       Impact factor: 47.728

7.  Biocatalytic asymmetric synthesis of chiral amines from ketones applied to sitagliptin manufacture.

Authors:  Christopher K Savile; Jacob M Janey; Emily C Mundorff; Jeffrey C Moore; Sarena Tam; William R Jarvis; Jeffrey C Colbeck; Anke Krebber; Fred J Fleitz; Jos Brands; Paul N Devine; Gjalt W Huisman; Gregory J Hughes
Journal:  Science       Date:  2010-06-17       Impact factor: 47.728

8.  Improving catalytic function by ProSAR-driven enzyme evolution.

Authors:  Richard J Fox; S Christopher Davis; Emily C Mundorff; Lisa M Newman; Vesna Gavrilovic; Steven K Ma; Loleta M Chung; Charlene Ching; Sarena Tam; Sheela Muley; John Grate; John Gruber; John C Whitman; Roger A Sheldon; Gjalt W Huisman
Journal:  Nat Biotechnol       Date:  2007-02-18       Impact factor: 54.908

Review 9.  Exploring protein fitness landscapes by directed evolution.

Authors:  Philip A Romero; Frances H Arnold
Journal:  Nat Rev Mol Cell Biol       Date:  2009-12       Impact factor: 94.444

Review 10.  Biocatalysis: Enzymatic Synthesis for Industrial Applications.

Authors:  Shuke Wu; Radka Snajdrova; Jeffrey C Moore; Kai Baldenius; Uwe T Bornscheuer
Journal:  Angew Chem Int Ed Engl       Date:  2020-06-18       Impact factor: 15.336

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