Literature DB >> 34812616

Colloidal Aggregators in Biochemical SARS-CoV-2 Repurposing Screens.

Henry R O'Donnell1, Tia A Tummino1,2,3, Conner Bardine4, Charles S Craik1,3, Brian K Shoichet1,3.   

Abstract

To fight COVID-19, much effort has been directed toward in vitro drug repurposing. Here, we investigate the impact of colloidal aggregation, a common screening artifact, in these repurposing campaigns. We tested 56 drugs reported as active in biochemical assays for aggregation by dynamic light scattering and by detergent-based enzyme counter screening; 19 formed colloids at concentrations similar to their literature IC50's, and another 14 were problematic. From a common repurposing library, we further selected another 15 drugs that had physical properties resembling known aggregators, finding that six aggregated at micromolar concentrations. This study suggests not only that many of the drugs repurposed for SARS-CoV-2 in biochemical assays are artifacts but that, more generally, at screening-relevant concentrations, even drugs can act artifactually via colloidal aggregation. Rapid detection of these artifacts will allow the community to focus on those molecules that genuinely have potential for treating COVID-19.

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Year:  2021        PMID: 34812616      PMCID: PMC8665103          DOI: 10.1021/acs.jmedchem.1c01547

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  45 in total

1.  A common mechanism underlying promiscuous inhibitors from virtual and high-throughput screening.

Authors:  Susan L McGovern; Emilia Caselli; Nikolaus Grigorieff; Brian K Shoichet
Journal:  J Med Chem       Date:  2002-04-11       Impact factor: 7.446

2.  A specific mechanism of nonspecific inhibition.

Authors:  Susan L McGovern; Brian T Helfand; Brian Feng; Brian K Shoichet
Journal:  J Med Chem       Date:  2003-09-25       Impact factor: 7.446

3.  Inventing new therapies without reinventing the wheel: the power of drug repurposing.

Authors:  Andreas Papapetropoulos; Csaba Szabo
Journal:  Br J Pharmacol       Date:  2018-01       Impact factor: 8.739

Review 4.  Apparent activity in high-throughput screening: origins of compound-dependent assay interference.

Authors:  Natasha Thorne; Douglas S Auld; James Inglese
Journal:  Curr Opin Chem Biol       Date:  2010-04-22       Impact factor: 8.822

5.  Colloid formation by drugs in simulated intestinal fluid.

Authors:  Allison K Doak; Holger Wille; Stanley B Prusiner; Brian K Shoichet
Journal:  J Med Chem       Date:  2010-05-27       Impact factor: 7.446

6.  A Crowding Barrier to Protein Inhibition in Colloidal Aggregates.

Authors:  Parnian Lak; Henry O'Donnell; Xuewen Du; Matthew P Jacobson; Brian K Shoichet
Journal:  J Med Chem       Date:  2021-03-24       Impact factor: 7.446

7.  Ceftazidime is a potential drug to inhibit SARS-CoV-2 infection in vitro by blocking spike protein-ACE2 interaction.

Authors:  ChangDong Lin; Yue Li; YueBin Zhang; ZhaoYuan Liu; Xia Mu; Chenjian Gu; Jing Liu; Yutang Li; GuoHui Li; JianFeng Chen
Journal:  Signal Transduct Target Ther       Date:  2021-05-18

8.  A drug repurposing screen identifies hepatitis C antivirals as inhibitors of the SARS-CoV2 main protease.

Authors:  Jeremy D Baker; Rikki L Uhrich; Gerald C Kraemer; Jason E Love; Brian C Kraemer
Journal:  PLoS One       Date:  2021-02-01       Impact factor: 3.240

9.  Discovery of Clioquinol and analogues as novel inhibitors of Severe Acute Respiratory Syndrome Coronavirus 2 infection, ACE2 and ACE2 - Spike protein interaction in vitro.

Authors:  Omonike A Olaleye; Manvir Kaur; Collins Onyenaka; Tolulope Adebusuyi
Journal:  Heliyon       Date:  2021-03-11

Review 10.  Drug repurposing approach to fight COVID-19.

Authors:  Thakur Uttam Singh; Subhashree Parida; Madhu Cholenahalli Lingaraju; Manickam Kesavan; Dinesh Kumar; Raj Kumar Singh
Journal:  Pharmacol Rep       Date:  2020-09-05       Impact factor: 3.919

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  2 in total

Review 1.  Biophysical Survey of Small-Molecule β-Catenin Inhibitors: A Cautionary Tale.

Authors:  Michael A McCoy; Dominique Spicer; Neil Wells; Kurt Hoogewijs; Marc Fiedler; Matthias G J Baud
Journal:  J Med Chem       Date:  2022-05-17       Impact factor: 8.039

2.  Validation and invalidation of SARS-CoV-2 main protease inhibitors using the Flip-GFP and Protease-Glo luciferase assays.

Authors:  Chunlong Ma; Haozhou Tan; Juliana Choza; Yuyin Wang; Jun Wang
Journal:  Acta Pharm Sin B       Date:  2021-11-01       Impact factor: 14.903

  2 in total

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