Literature DB >> 34808529

Displacement voxelization to resolve mesh-image mismatch: Application in deriving dense white matter fiber strains.

Songbai Ji1, Wei Zhao2.   

Abstract

BACKGROUND AND
OBJECTIVE: It is common to combine biomechanical modeling and medical images for multimodal analyses. However, mesh-image mismatch may occur that prevents direct information exchange. To eliminate mesh-image mismatch, we develop a simple but elegant displacement voxelization technique based on image voxel corner nodes to achieve voxel-wise strain. We then apply the technique to derive dense white matter fiber strains along whole-brain tractography (∼35 k fiber tracts consisting of ∼3.3 million sampling points) resulting from head impact.
METHODS: Displacements at image voxel corner nodes are first obtained from model simulation via scattered interpolation. Each voxel is then scaled linearly to form a unit hexahedral element. This allows convenient and efficient voxel-wise strain tensor calculation and displacement interpolation at arbitrary fiber sampling points via shape functions. Fiber strains from displacement interpolation are then compared with those from the commonly used strain tensor projection using either voxel- or element-wise strain tensors.
RESULTS: Based on a synthetic displacement field, fiber strains interpolated from voxelized displacement are considerably more accurate than those from strain tensor projection relative to the prescribed ground-truth (determinant of coefficient (R2) of 1.00 and root mean squared error (RMSE) of 0.01 vs. 0.87 and 0.10, respectively). For a set of real-world reconstructed head impacts (N = 53), the strain tensor projection method performs similarly poorly (R2 of 0.80-0.90 and RMSE of 0.03-0.07), with overestimation strongly correlated with strain magnitude (Pearson correlation coefficient >0.9). Up to ∼15% of the fiber strains are overestimated by more than the lower bound of a conservative injury threshold of 0.09. The percentage increases to ∼37% when halving the threshold. Voxel interpolation is also significantly more efficient (15 s vs. 40 s for element strain tensor projection, without parallelization).
CONCLUSIONS: Voxelized displacement interpolation is considerably more accurate and efficient in deriving dense white matter fiber strains than strain tensor projection. The latter generally overestimates with overestimation magnitude strongly correlating with fiber strain magnitude. Displacement voxelization is an effective technique to eliminate mesh-image mismatch and generates a convenient image representation of tissue deformation. This technique can be generalized to broadly facilitate a diverse range of image-related biomechanical problems for multimodal analyses. The convenient image format may also promote and facilitate biomechanical data sharing in the future.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Biomechanical model; Finite element method; Medical imaging; Multimodal analysis; Strain tensor; Ttraumatic brain injury; Worcester Head Injury Model

Mesh:

Year:  2021        PMID: 34808529      PMCID: PMC8665149          DOI: 10.1016/j.cmpb.2021.106528

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  36 in total

1.  Development of high-quality hexahedral human brain meshes using feature-based multi-block approach.

Authors:  Haojie Mao; Haitao Gao; Libo Cao; Vinay Veeranna Genthikatti; King H Yang
Journal:  Comput Methods Biomech Biomed Engin       Date:  2011-12-08       Impact factor: 1.763

2.  A viscoelastic model for axonal microtubule rupture.

Authors:  Amir Shamloo; Farid Manuchehrfar; Hashem Rafii-Tabar
Journal:  J Biomech       Date:  2015-03-20       Impact factor: 2.712

3.  Collagen fiber orientation at the tendon to bone insertion and its influence on stress concentrations.

Authors:  Stavros Thomopoulos; Juan P Marquez; Bradley Weinberger; Victor Birman; Guy M Genin
Journal:  J Biomech       Date:  2005-07-15       Impact factor: 2.712

4.  In vivo estimates of axonal stretch and 3D brain deformation during mild head impact.

Authors:  Andrew K Knutsen; Arnold D Gomez; Mihika Gangolli; Wen-Tung Wang; Deva Chan; Yuan-Chiao Lu; Eftychios Christoforou; Jerry L Prince; Philip V Bayly; John A Butman; Dzung L Pham
Journal:  Brain Multiphys       Date:  2020-09-03

5.  Injury prediction and vulnerability assessment using strain and susceptibility measures of the deep white matter.

Authors:  Wei Zhao; Yunliang Cai; Zhigang Li; Songbai Ji
Journal:  Biomech Model Mechanobiol       Date:  2017-05-12

Review 6.  Finite Element Methods in Human Head Impact Simulations: A Review.

Authors:  Amit Madhukar; Martin Ostoja-Starzewski
Journal:  Ann Biomed Eng       Date:  2019-01-28       Impact factor: 3.934

Review 7.  Development of numerical models for injury biomechanics research: a review of 50 years of publications in the Stapp Car Crash Conference.

Authors:  King H Yang; Jingwen Hu; Nicholas A White; Albert I King; Clifford C Chou; Priya Prasad
Journal:  Stapp Car Crash J       Date:  2006-11

8.  Evaluation of Axonal Strain as a Predictor for Mild Traumatic Brain Injuries Using Finite Element Modeling.

Authors:  Chiara Giordano; Svein Kleiven
Journal:  Stapp Car Crash J       Date:  2014-11

9.  Displacement Error Propagation From Embedded Markers to Brain Strain.

Authors:  Wei Zhao; Zheyang Wu; Songbai Ji
Journal:  J Biomech Eng       Date:  2021-10-01       Impact factor: 1.899

10.  The influence of the representation of collagen fibre organisation on the cartilage contact mechanics of the hip joint.

Authors:  Junyan Li; Xijin Hua; Alison C Jones; Sophie Williams; Zhongmin Jin; John Fisher; Ruth K Wilcox
Journal:  J Biomech       Date:  2016-04-04       Impact factor: 2.712

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  1 in total

1.  Real-time dynamic simulation for highly accurate spatiotemporal brain deformation from impact.

Authors:  Shaoju Wu; Wei Zhao; Songbai Ji
Journal:  Comput Methods Appl Mech Eng       Date:  2022-04-09       Impact factor: 6.588

  1 in total

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