Literature DB >> 34806765

A novel Bayesian functional spatial partitioning method with application to prostate cancer lesion detection using MRI.

Maria Masotti1, Lin Zhang1, Ethan Leng2, Gregory J Metzger2, Joseph S Koopmeiners1.   

Abstract

Spatial partitioning methods correct for nonstationarity in spatially related data by partitioning the space into regions of local stationarity. Existing spatial partitioning methods can only estimate linear partitioning boundaries. This is inadequate for detecting an arbitrarily shaped anomalous spatial region within a larger area. We propose a novel Bayesian functional spatial partitioning (BFSP) algorithm, which estimates closed curves that act as partitioning boundaries around anomalous regions of data with a distinct distribution or spatial process. Our method utilizes transitions between a fixed Cartesian and moving polar coordinate system to model the smooth boundary curves using functional estimation tools. Using adaptive Metropolis-Hastings, the BFSP algorithm simultaneously estimates the partitioning boundary and the parameters of the spatial distributions within each region. Through simulation we show that our method is robust to shape of the target zone and region-specific spatial processes. We illustrate our method through the detection of prostate cancer lesions using magnetic resonance imaging.
© 2021 The International Biometric Society.

Entities:  

Keywords:  biomedical imaging; functional estimation; spatial partitioning; spatial statistics

Year:  2021        PMID: 34806765      PMCID: PMC9306255          DOI: 10.1111/biom.13602

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   1.701


  7 in total

1.  Some statistical methods for investigating the date of birth as a disease indicator.

Authors:  Chap T Le; Ping Liu; Bruce R Lindgren; Kathleen A Daly; G Scott Giebink
Journal:  Stat Med       Date:  2003-07-15       Impact factor: 2.373

2.  Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates.

Authors:  Anders Eklund; Thomas E Nichols; Hans Knutsson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-28       Impact factor: 11.205

3.  Detection of prostate cancer with multiparametric MRI utilizing the anatomic structure of the prostate.

Authors:  Jin Jin; Lin Zhang; Ethan Leng; Gregory J Metzger; Joseph S Koopmeiners
Journal:  Stat Med       Date:  2018-06-19       Impact factor: 2.373

4.  Development of a measure for evaluating lesion-wise performance of CAD algorithms in the context of mpMRI detection of prostate cancer.

Authors:  Ethan Leng; Benjamin Spilseth; Lin Zhang; Jin Jin; Joseph S Koopmeiners; Gregory J Metzger
Journal:  Med Phys       Date:  2018-04-16       Impact factor: 4.071

5.  Detection of Prostate Cancer: Quantitative Multiparametric MR Imaging Models Developed Using Registered Correlative Histopathology.

Authors:  Gregory J Metzger; Chaitanya Kalavagunta; Benjamin Spilseth; Patrick J Bolan; Xiufeng Li; Diane Hutter; Jung W Nam; Andrew D Johnson; Jonathan C Henriksen; Laura Moench; Badrinath Konety; Christopher A Warlick; Stephen C Schmechel; Joseph S Koopmeiners
Journal:  Radiology       Date:  2016-01-29       Impact factor: 11.105

6.  Registration of in vivo prostate MRI and pseudo-whole mount histology using Local Affine Transformations guided by Internal Structures (LATIS).

Authors:  Chaitanya Kalavagunta; Xiangmin Zhou; Stephen C Schmechel; Gregory J Metzger
Journal:  J Magn Reson Imaging       Date:  2014-04-04       Impact factor: 4.813

Review 7.  Deep Learning for Brain MRI Segmentation: State of the Art and Future Directions.

Authors:  Zeynettin Akkus; Alfiia Galimzianova; Assaf Hoogi; Daniel L Rubin; Bradley J Erickson
Journal:  J Digit Imaging       Date:  2017-08       Impact factor: 4.056

  7 in total

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