| Literature DB >> 34803918 |
Hanxiao Chen1,2,3, Yaoyao Zhang1,3, Shangwei Li1,3, Yuanzhi Tao1,3, Rui Gao1,2, Wenming Xu3,4, Yihong Yang1,3, Kemin Cheng5, Yan Wang6, Lang Qin1,3.
Abstract
The association between polycystic ovary syndrome (PCOS) and endometrial cancer remains unclear. We aimed to investigate the causal association between genetically predicted PCOS and endometrial cancer risk in two ethnic groups through a two-sample Mendelian randomization (MR) approach. Our study includes 13 single nucleotide polymorphisms (SNPs) as instrumental variables (IVs) for PCOS in Europeans, and another 13 SNPs are used as IVs for PCOS in Asians. Outcome data were obtained from the largest published meta-GWAS of European ancestry to date, as well as from the BioBank Japan Project of Asian ancestry. Our study demonstrates that genetically predicted PCOS is not causally associated with the risk of overall endometrial cancer in either Europeans or Asians (odds ratio (OR) = 0.93, 95% confidence interval (CI) = 0.85-1.01, p = 0.09 and OR = 0.98, 95% CI 0.84-1.13, p = 0.75, respectively). Subgroup analyses according to histotype further illustrate that PCOS might not be associated with the risk of either endometrioid endometrial cancer or non-endometrioid endometrial cancer in European ancestry. No pleiotropy is found in our study, and a sensitivity analysis shows similar results. Our results indicate that genetically predicted PCOS might not be associated with the risk of endometrial cancer.Entities:
Keywords: GWAS; Mendelian randomization; SNP; endometrial cancer; polycystic ovary syndrome
Mesh:
Year: 2021 PMID: 34803918 PMCID: PMC8602912 DOI: 10.3389/fendo.2021.756137
Source DB: PubMed Journal: Front Endocrinol (Lausanne) ISSN: 1664-2392 Impact factor: 5.555
PCOS SNPs used to construct the instrument variable in Europeans.
| Chr | Position | SNP | Effect Allele | Other Allele | EAF | Beta | SE | Gene | P value |
|---|---|---|---|---|---|---|---|---|---|
| 2 | 43561780 | rs7563201 | A | G | 0.4507 | -0.1081 | 0.0172 | THADA | 3.68E-10 |
| 2 | 213391766 | rs2178575 | A | G | 0.1512 | 0.1663 | 0.0219 | ERBB4 | 3.34E-14 |
| 3 | 131813204 | rs13164856 | T | C | 0.7291 | 0.1235 | 0.0193 | IRF1/RAD50 | 1.45E-10 |
| 8 | 11623889 | rs804279 | A | T | 0.2616 | 0.1276 | 0.0184 | GATA4/NEIL2 | 3.76E-12 |
| 9 | 5440589 | rs10739076 | A | C | 0.3078 | 0.1097 | 0.0197 | PLGRKT | 2.51E-08 |
| 9 | 97723266 | rs7864171 | A | G | 0.4284 | -0.0933 | 0.0168 | FANCC | 2.95E-08 |
| 9 | 126619233 | rs9696009 | A | G | 0.0679 | 0.202 | 0.0311 | DENND1A | 7.96E-11 |
| 11 | 30226356 | rs11031005 | T | C | 0.8537 | -0.1593 | 0.0223 | ARL14EP/FSHB | 8.66E-13 |
| 11 | 102043240 | rs11225154 | A | G | 0.0941 | 0.1787 | 0.0272 | YAP1 | 5.44E-11 |
| 11 | 113949232 | rs1784692 | T | C | 0.8237 | 0.1438 | 0.0226 | ZBTB16 | 1.88E-10 |
| 12 | 56477694 | rs2271194 | A | T | 0.416 | 0.0971 | 0.0166 | ERBB3/RAB5B | 4.57E-09 |
| 12 | 75941042 | rs1795379 | T | C | 0.2398 | -0.1174 | 0.0195 | KRR1 | 1.81E-09 |
| 16 | 52375777 | rs8043701 | A | T | 0.815 | -0.1273 | 0.0208 | TOX3 | 9.61E-10 |
Chr, chromosome; SNP, single nucleotide polymorphism; EAF, effect allele frequency; SE, standard error.
PCOS SNPs used to construct the instrument variable in Asians.
| Chr | Position | SNP | Effect Allele | Other Allele | EAF | Beta | SE | Gene | P value |
|---|---|---|---|---|---|---|---|---|---|
| 2 | 43638838 | rs13429458 | A | C | 0.81 | 0.401 | 0.04 | THADA | 1.73E-23 |
| 2 | 48978159 | rs13405728 | A | G | 0.754 | 0.343 | 0.037 | LHCGR | 7.55E-21 |
| 2 | 49201612 | rs2268361 | C | T | 0.504 | 0.139 | 0.02 | FSHR | 9.89E-13 |
| 2 | 49247832 | rs2349415 | T | C | 0.181 | 0.174 | 0.025 | FSHR | 2.35E-12 |
| 9 | 97648587 | rs4385527 | G | A | 0.781 | 0.174 | 0.03 | C9orf3(AOPEP) | 5.87E-09 |
| 9 | 97741336 | rs3802457 | G | A | 0.904 | 0.261 | 0.035 | C9orf3(AOPEP) | 5.28E-14 |
| 9 | 126525212 | rs2479106 | G | A | 0.222 | 0.293 | 0.033 | DENND1A | 8.12E-19 |
| 11 | 102070639 | rs1894116 | G | A | 0.194 | 0.239 | 0.024 | YAP1 | 1.08E-22 |
| 12 | 56390636 | rs705702 | G | A | 0.245 | 0.239 | 0.023 | RAB5B/SUOX | 8.64E-26 |
| 12 | 66224461 | rs2272046 | A | C | 0.907 | 0.357 | 0.038 | HMGA2 | 1.95E-21 |
| 16 | 52347819 | rs4784165 | G | T | 0.325 | 0.14 | 0.021 | TOX3 | 3.64E-11 |
| 19 | 7166109 | rs2059807 | G | A | 0.301 | 0.131 | 0.023 | INSR | 1.09E-08 |
| 20 | 52447303 | rs6022786 | A | G | 0.339 | 0.122 | 0.02 | SUMO1P1 | 1.83E-09 |
Chr, chromosome; SNP, single nucleotide polymorphism; EAF, effect allele frequency; SE, standard error.
Figure 1Causal effect estimates of PCOS on endometrial cancer: the inverse-variance weighted (IVW) method was applied as the primary method for MR analysis. Abbreviations: PCOS, polycystic ovary syndrome; IVS, instrumental variables; SNP, single nucleotide polymorphism; n, number (number of SNPs included in the analysis); b, beta coefficient; se, standard error; OR, odds ratio; CI, confidence interval; BMI, body mass index; WHR, waist-to-hip ratio.
Associations between genetically predicted PCOS and endometrial cancer in Asians and Europeans using MR-Egger, weighted median, inverse variance weighted, simple mode, weighted mode and MR-PRESSO methods.
| Outcomes | Number of SNPs | Beta | SE | OR (95% CI) | P | P for heterogeneity test | P for MR-Egger intercept | P for MR-PRESSO |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| MR Egger | 13 | -0.04 | 0.218 | 0.961 (0.627 - 1.472) | 0.857 | 0.236 | 0.873 | |
| Weighted median | 13 | -0.043 | 0.062 | 0.958 (0.849 - 1.081) | 0.489 | |||
| Inverse variance weighted | 13 | -0.075 | 0.044 | 0.928 (0.851 - 1.011) | 0.088 | 0.302 | ||
| Simple mode | 13 | -0.01 | 0.109 | 0.990 (0.799 - 1.227) | 0.928 | |||
| Weighted mode | 13 | -0.029 | 0.115 | 0.971 (0.775 - 1.217) | 0.805 | |||
| MR-PRESSO (raw, 0 outliers) | 13 | -0.058 | 0.045 | 0.944 (0.864 - 1.031) | 0.222 | 0.190 | ||
|
| ||||||||
| MR Egger | 13 | -0.12 | 0.23 | 0.887 (0.564 - 1.393) | 0.612 | 0.441 | 0.742 | |
| Weighted median | 13 | -0.033 | 0.07 | 0.967 (0.843 - 1.109) | 0.632 | |||
| Inverse variance weighted | 13 | -0.044 | 0.048 | 0.957 (0.870 - 1.052) | 0.362 | 0.517 | ||
| Simple mode | 13 | -0.022 | 0.117 | 0.978 (0.778 - 1.230) | 0.854 | |||
| Weighted mode | 13 | -0.029 | 0.111 | 0.972 (0.781 - 1.208) | 0.800 | |||
| MR-PRESSO (raw, 0 outliers) | 13 | -0.018 | 0.051 | 0.982 (0.889 - 1.085) | 0.729 | 0.269 | ||
|
| ||||||||
| MR Egger | 13 | 0.521 | 0.565 | 1.684 (0.557 - 5.095) | 0.376 | 0.449 | 0.358 | |
| Weighted median | 13 | 0 | 0.162 | 1.000 (0.728 - 1.375) | 0.999 | |||
| Inverse variance weighted | 13 | -0.009 | 0.118 | 0.991 (0.786 - 1.250) | 0.941 | 0.457 | ||
| Simple mode | 13 | 0.041 | 0.285 | 1.042 (0.596 - 1.820) | 0.889 | |||
| Weighted mode | 13 | 0.035 | 0.292 | 1.036 (0.584 - 1.836) | 0.906 | |||
| MR-PRESSO (raw, 0 outliers) | 13 | -0.004 | 0.109 | 0.996 (0.804 - 1.233) | 0.973 | 0.505 | ||
|
| ||||||||
| MR Egger | 13 | 0.01 | 0.204 | 1.010 (0.678 - 1.505) | 0.963 | 0.091 | 0.858 | |
| Weighted median | 13 | -0.011 | 0.092 | 0.989 (0.826 - 1.185) | 0.907 | |||
| Inverse variance weighted | 13 | -0.024 | 0.077 | 0.976 (0.839 - 1.135) | 0.751 | 0.127 | ||
| Simple mode | 13 | -0.022 | 0.158 | 0.978 (0.717 - 1.335) | 0.893 | |||
| Weighted mode | 13 | -0.002 | 0.112 | 0.998 (0.801 - 1.242) | 0.983 | |||
| MR-PRESSO (raw, 0 outliers) | 13 | -0.0245 | 0.077 | 0.976 (0.839 - 1.135) | 0.756 | 0.132 | ||
SNP, single nucleotide polymorphism; SE, standard error; OR, odds ratio; CI, confidential interval.