Literature DB >> 34803161

Using deep-neural-network-driven facial recognition to identify distinct Kabuki syndrome 1 and 2 gestalt.

Flavien Rouxel1, Kevin Yauy1, Guilaine Boursier2, Vincent Gatinois3, Mouna Barat-Houari2, Elodie Sanchez1, Didier Lacombe4, Stéphanie Arpin5, Fabienne Giuliano6, Damien Haye7,8, Marlène Rio9, Annick Toutain5, Klaus Dieterich10, Elise Brischoux-Boucher11, Sophie Julia12, Mathilde Nizon13, Alexandra Afenjar14, Boris Keren8, Aurelia Jacquette8, Sebastien Moutton15, Marie-Line Jacquemont16, Claire Duflos17, Yline Capri7, Jeanne Amiel9, Patricia Blanchet1, Stanislas Lyonnet9, Damien Sanlaville18, David Genevieve19.   

Abstract

Kabuki syndrome (KS) is a rare genetic disorder caused by mutations in two major genes, KMT2D and KDM6A, that are responsible for Kabuki syndrome 1 (KS1, OMIM147920) and Kabuki syndrome 2 (KS2, OMIM300867), respectively. We lack a description of clinical signs to distinguish KS1 and KS2. We used facial morphology analysis to detect any facial morphological differences between the two KS types. We used a facial-recognition algorithm to explore any facial morphologic differences between the two types of KS. We compared several image series of KS1 and KS2 individuals, then compared images of those of Caucasian origin only (12 individuals for each gene) because this was the main ethnicity in this series. We also collected 32 images from the literature to amass a large series. We externally validated results obtained by the algorithm with evaluations by trained clinical geneticists using the same set of pictures. Use of the algorithm revealed a statistically significant difference between each group for our series of images, demonstrating a different facial morphotype between KS1 and KS2 individuals (mean area under the receiver operating characteristic curve = 0.85 [p = 0.027] between KS1 and KS2). The algorithm was better at discriminating between the two types of KS with images from our series than those from the literature (p = 0.0007). Clinical geneticists trained to distinguished KS1 and KS2 significantly recognised a unique facial morphotype, which validated algorithm findings (p = 1.6e-11). Our deep-neural-network-driven facial-recognition algorithm can reveal specific composite gestalt images for KS1 and KS2 individuals.
© 2021. The Author(s), under exclusive licence to European Society of Human Genetics.

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Year:  2021        PMID: 34803161      PMCID: PMC9177756          DOI: 10.1038/s41431-021-00994-8

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   5.351


  21 in total

1.  KDM6A point mutations cause Kabuki syndrome.

Authors:  Noriko Miyake; Seiji Mizuno; Nobuhiko Okamoto; Hirofumi Ohashi; Masaaki Shiina; Kazuhiro Ogata; Yoshinori Tsurusaki; Mitsuko Nakashima; Hirotomo Saitsu; Norio Niikawa; Naomichi Matsumoto
Journal:  Hum Mutat       Date:  2012-10-17       Impact factor: 4.878

2.  Next generation phenotyping in Emanuel and Pallister-Killian syndrome using computer-aided facial dysmorphology analysis of 2D photos.

Authors:  T Liehr; N Acquarola; K Pyle; S St-Pierre; M Rinholm; O Bar; K Wilhelm; I Schreyer
Journal:  Clin Genet       Date:  2017-11-29       Impact factor: 4.438

3.  Genome sequencing identifies major causes of severe intellectual disability.

Authors:  Christian Gilissen; Jayne Y Hehir-Kwa; Djie Tjwan Thung; Maartje van de Vorst; Bregje W M van Bon; Marjolein H Willemsen; Michael Kwint; Irene M Janssen; Alexander Hoischen; Annette Schenck; Richard Leach; Robert Klein; Rick Tearle; Tan Bo; Rolph Pfundt; Helger G Yntema; Bert B A de Vries; Tjitske Kleefstra; Han G Brunner; Lisenka E L M Vissers; Joris A Veltman
Journal:  Nature       Date:  2014-06-04       Impact factor: 49.962

4.  Automatic recognition of the XLHED phenotype from facial images.

Authors:  Smail Hadj-Rabia; Holm Schneider; Elena Navarro; Ophir Klein; Neil Kirby; Kenneth Huttner; Lior Wolf; Melanie Orin; Sigrun Wohlfart; Christine Bodemer; Dorothy K Grange
Journal:  Am J Med Genet A       Date:  2017-07-10       Impact factor: 2.802

5.  Novel KDM6A (UTX) mutations and a clinical and molecular review of the X-linked Kabuki syndrome (KS2).

Authors:  S Banka; D Lederer; V Benoit; E Jenkins; E Howard; S Bunstone; B Kerr; S McKee; I C Lloyd; D Shears; H Stewart; S M White; R Savarirayan; G M S Mancini; D Beysen; R D Cohn; B Grisart; I Maystadt; D Donnai
Journal:  Clin Genet       Date:  2014-03-27       Impact factor: 4.438

Review 6.  A primer on deep learning in genomics.

Authors:  James Zou; Mikael Huss; Abubakar Abid; Pejman Mohammadi; Ali Torkamani; Amalio Telenti
Journal:  Nat Genet       Date:  2018-11-26       Impact factor: 38.330

7.  Identifying facial phenotypes of genetic disorders using deep learning.

Authors:  Yaron Gurovich; Yair Hanani; Omri Bar; Guy Nadav; Nicole Fleischer; Dekel Gelbman; Lina Basel-Salmon; Peter M Krawitz; Susanne B Kamphausen; Martin Zenker; Lynne M Bird; Karen W Gripp
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

8.  Advances in computer-assisted syndrome recognition by the example of inborn errors of metabolism.

Authors:  Jean T Pantel; Max Zhao; Martin A Mensah; Nurulhuda Hajjir; Tzung-Chien Hsieh; Yair Hanani; Nicole Fleischer; Tom Kamphans; Stefan Mundlos; Yaron Gurovich; Peter M Krawitz
Journal:  J Inherit Metab Dis       Date:  2018-04-05       Impact factor: 4.982

9.  A de novo KMT2D mutation in a girl with Kabuki syndrome associated with endocrine symptoms: a case report.

Authors:  Jung-Eun Moon; Su-Jeong Lee; Cheol Woo Ko
Journal:  BMC Med Genet       Date:  2018-06-18       Impact factor: 2.103

10.  Next-generation phenotyping using computer vision algorithms in rare genomic neurodevelopmental disorders.

Authors:  Bert B A de Vries; Jayne Y Hehir-Kwa; Roos van der Donk; Sandra Jansen; Janneke H M Schuurs-Hoeijmakers; David A Koolen; Lia C M J Goltstein; Alexander Hoischen; Han G Brunner; Patrick Kemmeren; Christoffer Nellåker; Lisenka E L M Vissers
Journal:  Genet Med       Date:  2018-12-20       Impact factor: 8.822

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  1 in total

1.  What's new in genetics in June 2022?

Authors:  Alisdair McNeill
Journal:  Eur J Hum Genet       Date:  2022-06       Impact factor: 5.351

  1 in total

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