Literature DB >> 34800366

Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context.

Marcel Morgenstern1, Christian D Peikert1, Philipp Lübbert2, Ida Suppanz1, Cinzia Klemm1, Oliver Alka1, Conny Steiert3, Nataliia Naumenko4, Alexander Schendzielorz1, Laura Melchionda5, Wignand W D Mühlhäuser1, Bettina Knapp1, Jakob D Busch3, Sebastian B Stiller3, Stefan Dannenmaier1, Caroline Lindau3, Mariya Licheva2, Christopher Eickhorst6, Riccardo Galbusera7, Ralf M Zerbes3, Michael T Ryan8, Claudine Kraft5, Vera Kozjak-Pavlovic9, Friedel Drepper1, Sven Dennerlein4, Silke Oeljeklaus1, Nikolaus Pfanner10, Nils Wiedemann11, Bettina Warscheid12.   

Abstract

Mitochondria are key organelles for cellular energetics, metabolism, signaling, and quality control and have been linked to various diseases. Different views exist on the composition of the human mitochondrial proteome. We classified >8,000 proteins in mitochondrial preparations of human cells and defined a mitochondrial high-confidence proteome of >1,100 proteins (MitoCoP). We identified interactors of translocases, respiratory chain, and ATP synthase assembly factors. The abundance of MitoCoP proteins covers six orders of magnitude and amounts to 7% of the cellular proteome with the chaperones HSP60-HSP10 being the most abundant mitochondrial proteins. MitoCoP dynamics spans three orders of magnitudes, with half-lives from hours to months, and suggests a rapid regulation of biosynthesis and assembly processes. 460 MitoCoP genes are linked to human diseases with a strong prevalence for the central nervous system and metabolism. MitoCoP will provide a high-confidence resource for placing dynamics, functions, and dysfunctions of mitochondria into the cellular context.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Mitochondria; complexome; copy numbers; disease; half-lives; high-confidence proteome; human cells; protein translocation; respiratory chain; smORFs

Mesh:

Substances:

Year:  2021        PMID: 34800366      PMCID: PMC8664129          DOI: 10.1016/j.cmet.2021.11.001

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  140 in total

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Authors:  Lothar Kussmaul; Judy Hirst
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-08       Impact factor: 11.205

2.  Dual role of mitofilin in mitochondrial membrane organization and protein biogenesis.

Authors:  Karina von der Malsburg; Judith M Müller; Maria Bohnert; Silke Oeljeklaus; Paulina Kwiatkowska; Thomas Becker; Adrianna Loniewska-Lwowska; Sebastian Wiese; Sanjana Rao; Dusanka Milenkovic; Dana P Hutu; Ralf M Zerbes; Agnes Schulze-Specking; Helmut E Meyer; Jean-Claude Martinou; Sabine Rospert; Peter Rehling; Chris Meisinger; Marten Veenhuis; Bettina Warscheid; Ida J van der Klei; Nikolaus Pfanner; Agnieszka Chacinska; Martin van der Laan
Journal:  Dev Cell       Date:  2011-09-22       Impact factor: 12.270

3.  Prohibitins interact genetically with Atp23, a novel processing peptidase and chaperone for the F1Fo-ATP synthase.

Authors:  Christof Osman; Claudia Wilmes; Takashi Tatsuta; Thomas Langer
Journal:  Mol Biol Cell       Date:  2006-11-29       Impact factor: 4.138

4.  Human deafness dystonia syndrome is caused by a defect in assembly of the DDP1/TIMM8a-TIMM13 complex.

Authors:  Karin Roesch; Sean P Curran; Lisbeth Tranebjaerg; Carla M Koehler
Journal:  Hum Mol Genet       Date:  2002-03-01       Impact factor: 6.150

5.  Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

Authors:  Hyun-Woo Rhee; Peng Zou; Namrata D Udeshi; Jeffrey D Martell; Vamsi K Mootha; Steven A Carr; Alice Y Ting
Journal:  Science       Date:  2013-01-31       Impact factor: 47.728

6.  A mitochondrial protein compendium elucidates complex I disease biology.

Authors:  David J Pagliarini; Sarah E Calvo; Betty Chang; Sunil A Sheth; Scott B Vafai; Shao-En Ong; Geoffrey A Walford; Canny Sugiana; Avihu Boneh; William K Chen; David E Hill; Marc Vidal; James G Evans; David R Thorburn; Steven A Carr; Vamsi K Mootha
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

7.  Multiple mitochondrial thioesterases have distinct tissue and substrate specificity and CoA regulation, suggesting unique functional roles.

Authors:  Carmen Bekeova; Lauren Anderson-Pullinger; Kevin Boye; Felix Boos; Yana Sharpadskaya; Johannes M Herrmann; Erin L Seifert
Journal:  J Biol Chem       Date:  2019-11-01       Impact factor: 5.157

8.  Mitochondrial protein translocation-associated degradation.

Authors:  Chantal Priesnitz; Jiyao Song; Christoph U Mårtensson; Lars Ellenrieder; Kim Nguyen Doan; Felix Boos; Alessia Floerchinger; Nicole Zufall; Silke Oeljeklaus; Bettina Warscheid; Thomas Becker
Journal:  Nature       Date:  2019-05-22       Impact factor: 49.962

9.  NSUN2 introduces 5-methylcytosines in mammalian mitochondrial tRNAs.

Authors:  Lindsey Van Haute; Song-Yi Lee; Beverly J McCann; Christopher A Powell; Dhiru Bansal; Lina Vasiliauskaitė; Caterina Garone; Sanghee Shin; Jong-Seo Kim; Michaela Frye; Joseph G Gleeson; Eric A Miska; Hyun-Woo Rhee; Michal Minczuk
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

10.  CHCHD10 mutations promote loss of mitochondrial cristae junctions with impaired mitochondrial genome maintenance and inhibition of apoptosis.

Authors:  Emmanuelle C Genin; Morgane Plutino; Sylvie Bannwarth; Elodie Villa; Eugenia Cisneros-Barroso; Madhuparna Roy; Bernardo Ortega-Vila; Konstantina Fragaki; Françoise Lespinasse; Estefania Pinero-Martos; Gaëlle Augé; David Moore; Florence Burté; Sandra Lacas-Gervais; Yusuke Kageyama; Kie Itoh; Patrick Yu-Wai-Man; Hiromi Sesaki; Jean-Ehrland Ricci; Cristofol Vives-Bauza; Véronique Paquis-Flucklinger
Journal:  EMBO Mol Med       Date:  2016-01-01       Impact factor: 12.137

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  10 in total

1.  The mystery of mitochondrial plasticity: TMBIM5 integrates metabolic state and proteostasis.

Authors:  Mindong Ren; Michael Schlame
Journal:  EMBO J       Date:  2022-08-01       Impact factor: 14.012

Review 2.  Long-lived mitochondrial proteins and why they exist.

Authors:  Ewa Bomba-Warczak; Jeffrey N Savas
Journal:  Trends Cell Biol       Date:  2022-02-24       Impact factor: 21.167

Review 3.  Crosstalk between Mitochondrial Protein Import and Lipids.

Authors:  Juliane J Hoffmann; Thomas Becker
Journal:  Int J Mol Sci       Date:  2022-05-09       Impact factor: 6.208

Review 4.  Gap Junction-Dependent and -Independent Functions of Connexin43 in Biology.

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Journal:  Biology (Basel)       Date:  2022-02-11

Review 5.  Proximity-Dependent Biotinylation Approaches to Explore the Dynamic Compartmentalized Proteome.

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Journal:  Front Mol Biosci       Date:  2022-03-04

6.  Paeoniflorin Upregulates Mitochondrial Thioredoxin of Schwann Cells to Improve Diabetic Peripheral Neuropathy Indicated by 4D Label-Free Quantitative Proteomics.

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Journal:  Oxid Med Cell Longev       Date:  2022-03-18       Impact factor: 6.543

7.  Mice lacking the mitochondrial exonuclease MGME1 develop inflammatory kidney disease with glomerular dysfunction.

Authors:  Dusanka Milenkovic; Adrián Sanz-Moreno; Julia Calzada-Wack; Birgit Rathkolb; Oana Veronica Amarie; Raffaele Gerlini; Antonio Aguilar-Pimentel; Jelena Misic; Marie-Lune Simard; Eckhard Wolf; Helmut Fuchs; Valerie Gailus-Durner; Martin Hrabě de Angelis; Nils-Göran Larsson
Journal:  PLoS Genet       Date:  2022-05-09       Impact factor: 6.020

8.  Balanced mitochondrial and cytosolic translatomes underlie the biogenesis of human respiratory complexes.

Authors:  Iliana Soto; Mary Couvillion; Katja G Hansen; Erik McShane; J Conor Moran; Antoni Barrientos; L Stirling Churchman
Journal:  Genome Biol       Date:  2022-08-09       Impact factor: 17.906

9.  Aberrant RNA processing contributes to the pathogenesis of mitochondrial diseases in trans-mitochondrial mouse model carrying mitochondrial tRNALeu(UUR) with a pathogenic A2748G mutation.

Authors:  Haruna Tani; Kaori Ishikawa; Hiroaki Tamashiro; Emi Ogasawara; Takehiro Yasukawa; Shigeru Matsuda; Akinori Shimizu; Dongchon Kang; Jun-Ichi Hayashi; Fan-Yan Wei; Kazuto Nakada
Journal:  Nucleic Acids Res       Date:  2022-08-24       Impact factor: 19.160

10.  Mammalian RNase H1 directs RNA primer formation for mtDNA replication initiation and is also necessary for mtDNA replication completion.

Authors:  Jelena Misic; Dusanka Milenkovic; Ali Al-Behadili; Xie Xie; Min Jiang; Shan Jiang; Roberta Filograna; Camilla Koolmeister; Stefan J Siira; Louise Jenninger; Aleksandra Filipovska; Anders R Clausen; Leonardo Caporali; Maria Lucia Valentino; Chiara La Morgia; Valerio Carelli; Thomas J Nicholls; Anna Wredenberg; Maria Falkenberg; Nils-Göran Larsson
Journal:  Nucleic Acids Res       Date:  2022-08-10       Impact factor: 19.160

  10 in total

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