Semiconducting O-doped polycyclic aromatic hydrocarbons constitute a class of molecules whose optoelectronic properties can be tailored by acting on the π-extension of the carbon-based frameworks and on the oxygen linkages. Although much is known about their photophysical and electrochemical properties in solution, their self-assembly interfacial behavior on solid substrates has remained unexplored so far. In this paper, we have focused our attention on the on-surface self-assembly of O-doped bi-perylene derivatives. Their ability to assemble in ordered networks on Cu(111) single-crystalline surfaces allowed a combination of structural, morphological, and spectroscopic studies. In particular, the exploitation of the orbital mapping methodology based on angle-resolved photoemission spectroscopy, with the support of scanning tunneling microscopy and low-energy electron diffraction, allowed the identification of both the electronic structure of the adsorbates and their geometric arrangement. Our multi-technique experimental investigation includes the structure determination from powder X-ray diffraction data for a specific compound and demonstrates that the electronic structure of such large molecular self-assembled networks can be studied using the reconstruction methods of molecular orbitals from photoemission data even in the presence of segregated chiral domains.
Semiconducting O-doped polycyclic aromatic hydrocarbons constitute a class of molecules whose optoelectronic properties can be tailored by acting on the π-extension of the carbon-based frameworks and on the oxygen linkages. Although much is known about their photophysical and electrochemical properties in solution, their self-assembly interfacial behavior on solid substrates has remained unexplored so far. In this paper, we have focused our attention on the on-surface self-assembly of O-doped bi-perylene derivatives. Their ability to assemble in ordered networks on Cu(111) single-crystalline surfaces allowed a combination of structural, morphological, and spectroscopic studies. In particular, the exploitation of the orbital mapping methodology based on angle-resolved photoemission spectroscopy, with the support of scanning tunneling microscopy and low-energy electron diffraction, allowed the identification of both the electronic structure of the adsorbates and their geometric arrangement. Our multi-technique experimental investigation includes the structure determination from powder X-ray diffraction data for a specific compound and demonstrates that the electronic structure of such large molecular self-assembled networks can be studied using the reconstruction methods of molecular orbitals from photoemission data even in the presence of segregated chiral domains.
Recently reported semiconducting O-doped polycyclic aromatic hydrocarbons (PAHs), bearing a
pyranopyranil or a furanyl core, are very appealing candidates for photoelectronic
applications and as p-type semiconductors, showing exceptionally high emission yields and
tunable optoelectronic properties in solution.[1−5] Photophysical and electrochemical characterization showed that
complementary spectroscopic and redox properties could be tailored through fine tuning of
both the π-extension of the carbon scaffold and the oxygen linkages (i.e., furanyl vs
pyranopyranyl rings). However, without detailed information about their interfacial
electronic properties, the implementation of these complexes into devices would be based on
a trial and error method because the coupling to a counter electrode may change the
electronic and structural properties of the molecular contact layer, ultimately affecting
the efficiency of charge transport of the next molecular layers. On one hand, the morphology
of the interface governs the degree of order and orientation of the next organic
layers,[6−8] ultimately affecting the
contact resistance.[9] On the other hand, the molecular orientation and
degree of rehybridization of the first contact layer determine the intrinsic efficiency of
charge injection,[10] in terms of alignment of conduction bands and
molecular orbitals, as well as chemical and spatial localization of the preferential channel
of charge transfer. A combination of structural, morphological, and spectroscopic studies of
the interfacial layer at metal substrates is necessary to get insight into the mechanisms
governing the formation of thin films: from their assembly to the degree of electronic
coupling to the substrate.[11−13] From this perspective, the
use of the orbital mapping based on angle-resolved photoemission (ARPES), together with the
support of complementary techniques, such as scanning tunneling microscopy (STM) and
low-energy electron diffraction (LEED), allows us to shed light on π-conjugated
systems, identifying both the electronic structure of the adsorbates and their geometric
arrangement.[14] The momentum distribution of the photoemission intensity
can be used to study the orientation of molecules within their unit cell and to disentangle
the valence band states stemming from the substrate from those localized on molecules and
hence to evaluate the intermolecular and molecule–substrate interactions.[15] A number of adsorption effects have been derived from ARPES momentum
mapping. For instance, chemical modifications in the molecule have been
identified,[16,17] and
in several studies, geometrical parameters of the adsorbate could be determined from the
orbital momentum mapping including azimuthal orientations of molecules,[18,19] inter-ring torsion
angles,[20,21] and
molecular tilt angles.[22] Our approach has been to perform a
multi-technique experimental investigation of complex PAH molecules with similar geometries.
In particular, within the class of biperylene derivatives, we investigated the monolayer
phase on the Cu(111) surface of three compounds very similar in elemental composition, but
with a substantial difference in their morphological adaptation. The
Esatertbutyl-Biperylenol (BPOL), Esatertbutyl-Biperyleno-Furanyl
(BPF), and Esatertbutyl-Biperyleno-Pyranopyranyl (BPPP)
molecules are basically the same in terms of stoichiometry, with a different linkage between
the two perylene arms (see molecular schemes in Figure ), with one carbon bridge and two OH groups in BPOL and one and two
bridging oxygen atoms in BPF and BPPP, respectively. These
differences make them behave very differently in terms of optical emission yield and
absorption in the UV–visible spectral region.[23] A different
self-organization and intermolecular arrangement is also expected when deposited onto the
substrate surface, and as a consequence, the resulting two-dimensional (2D) networks may
display distinct electronic features.
Figure 1
Chemical structures of the O-doped perylenes investigated in this study:
5,5′,8,8′,11,11′-hexa-tert-butyl-[3,3′-biperylene]-2,2′-diol
(BPOL),
2,5,8,14,17,20-hexa-tert-butyldiperyleno[2,3-b:3′,2′-d]furan
(BPF), and
2,5,9,12,15,19-hexa-tert-butylbenzo[5′,10′]anthra[9′,1′,2′:7,8,1]isochromeno[5,4,3-cde]benzo[5,10]anthra[9,1,2-hij]isochromene
(BPPP).[23]
Chemical structures of the O-doped perylenes investigated in this study:
5,5′,8,8′,11,11′-hexa-tert-butyl-[3,3′-biperylene]-2,2′-diol
(BPOL),
2,5,8,14,17,20-hexa-tert-butyldiperyleno[2,3-b:3′,2′-d]furan
(BPF), and
2,5,9,12,15,19-hexa-tert-butylbenzo[5′,10′]anthra[9′,1′,2′:7,8,1]isochromeno[5,4,3-cde]benzo[5,10]anthra[9,1,2-hij]isochromene
(BPPP).[23]Hereafter, we show that O-doped biperylene derivatives deposited on Cu(111) surfaces
self-organize into ordered extended homochiral domains with a well-defined molecular
lattice. This makes these systems suitable to be studied with the orbital tomography
methodology that maps their electronic states in k-space. Capitalizing on
the ARPES-based momentum mapping methodology, the electronic states of this class of
molecules has been probed, showing that they remain intact upon deposition on the
surface.
Experimental and Computational Details
While the crystal structures of BPOL and BPF were established
previously by single-crystal X-ray diffraction analysis,[23,24] the growth of single crystals of
BPPP suitable for single-crystal X-ray diffraction turned out to be
difficult. Thus, we have carried out structure determination of BPPP directly
from powder X-ray diffraction (XRD) data. The microcrystalline powder sample of
BPPP used in this study was prepared by sublimation. High-quality powder XRD
data of BPPP suitable for structure determination were recorded on a Bruker D8
instrument (Ge-monochromated Cu Kα1 radiation; λ = 1.54056 Å)
operating in transmission mode. The powder sample of BPPP was packed into two
capillaries which were flame-sealed and attached to the disc sample holder of the powder XRD
instrument. The powder XRD data were recorded over the 2θ range of 4–70°
(step size, 0.017°) with a total data collection time of 64 h 4 min. In conjunction
with structure determination from powder XRD data, periodic DFT-D calculations involving
geometry optimization (with fixed unit cell) were carried out on trial structures at various
stages of the structure determination process using the program CASTEP[25]
(Academic Release version 7.02). The periodic DFT-D calculations were run with a basis set
cutoff energy of 700 eV, ultrasoft pseudopotentials, the PBE functional, semiempirical
dispersion corrections (TS correction scheme), fixed unit cell, preserved space group
symmetry, and periodic boundary conditions. The convergence criteria for geometry
optimization were 0.01 eV Å–1 for forces, 0.00001 eV per atom for
energy, and 0.001 Å for atomic displacements.BPOL, BPF, and BPPP molecules were sublimed in
ultra-high vacuum (UHV) from a homemade multiple slot Ta-crucible evaporator at
approximately 570, 590, and 410 K, respectively, with a deposition rate of ∼0.1
ML/min. The Cu(111) surface was cleaned by repeated cycles of Ar+ sputtering at
1.0 keV at room temperature and thermal annealing up to 900 K.STM is a technique capable of directly visualizing spatial patterns of the local density of
states (LDOS) from the long range (hundreds of nm) down to the sub-nanometer scale, where
intra-molecular features can also be revealed with sub-Å resolution.[26] STM measurements have been performed in UHV (base pressure 3 ×
10–10 mbar) at the IOM-Elettra joint laboratory for microscopy OSMOS
with a SPECS-Aarhus type microscope. The topographic images were obtained at room
temperature with a tungsten tip after deposition of increasing coverage up to the full
saturation of the monolayer. The length scale was calibrated on atomically resolved images
of highly oriented pyrolytic graphyte (HOPG).LEED and ARPES measurements were carried out at the BaDElPh beamline[27]
of Elettra Synchrotron in Trieste. Using LEED, we obtain additional information on the
ordering of a molecular adsorbate with respect to the substrate as it images the periodic
pattern in the 2D reciprocal space of the investigated surface. Since the probe depth of the
impinging electrons is on the nanometer scale, a LEED pattern contains spots relating to the
periodicities of both the substrate and the adsorbate. Moreover, since the LEED probed area
is normally of mm size, all domain orientations are generally present in a LEED image. LEED
diffractograms have been obtained in situ using beam energies in the range of 16–30
eV, and the best-contrast criterion has been used to calibrate the monolayer coverage. The
superlattice parameters have been obtained through the best-match comparison of the
experimental patterns with the simulated patternsa (with the starting input
of the vectors measured by STM).When performing photoemission experiments on prototype organic semiconductors, the initial
state can be approximated as if the photoelectron stems from a single molecular
orbital.[28−30] The further assumption
that the final state is a plane wave (PW) leads to a direct interpretation of ARPES
experiments: the transition matrix element reduces to the Fourier transform
ϕ̃(k) of the molecular orbital
ϕ(r) from which the electron is emitted.
Thus, the photoemission intensity,
I(k,k)
∝
|A·k|2|ϕ̃(k)|2,
reveals the structure of orbital densities on a hemisphere of constant kinetic energy in
momentum space.[29,31] The
selection of a particular value for allows the extraction of energy
distribution curves (EDCs) from the photoemission data cube, facilitating the identification
of molecule-derived states. Using horizontal (p) polarized radiation and a photon energy of
31 eV, we have followed the photoelectrons dispersion of the molecular features in the
valence band by scanning the Brillouin zone (BZ). The spectra were recorded at polar angles
in the range of 6–48° with respect to the surface normal and by azimuthal scans
in the range of 0–180°. The resulting converted images from kinetic energy and
angular to binding energy and parallel wave vector coordinates have been symmetrized
according to the substrate’s p3m1 symmetry group.
The overall energy and angular resolution were set to 100 meV and less than 0.3°,
respectively.For ab initio calculations of the relaxed gas-phase molecules, we employed the VASP
code[32−35] using a sufficiently large unit cell and Γ-point
sampling of the Brillouin zone. Exchange–correlation effects were approximated using
the generalized gradient approximation.[36] With the projector augmented
wave approach,[37] this enabled using a relatively low kinetic-energy
cutoff of about 500 eV. The molecular orbitals (MOs) were then calculated with
NWchem.[38] The placement of the molecules (and the number of molecules
per unit cell) relative to (the symmetry elements of) the substrate was inferred from the
STM and LEED measurements. Also, guided by the STM measurements, we included the chiral
forms of BPOL, BPF (intrinsic chirality) and BPPP
(pro-chirality) in the simulation.
Results and Discussion
XRD on BPPP
The powder XRD pattern of BPPP was indexed using the program DICVOL within
the CRYSFIRE suite of indexing programs,[39] giving the following unit
cell with monoclinic metric symmetry: a = 13.51 Å,
b = 5.98 Å, c = 29.77 Å, β =
94.7° (V = 2395 Å3). In the indexing process, two
peaks (at 2θ ≈ 4.1° and 2θ ≈ 23.6°) were removed as
they were identified as originating from impurity crystalline phases. Given the volume of
the unit cell and consideration of density, the number of formula units in the unit cell
was assigned as Z = 2. From systematic absences, the space group was
assigned as P21/c. As this space group has a
multiplicity of 4, the number of molecules of BPPP in the asymmetric unit is
Z′ = 1/2. Profile fitting and unit cell refinement using the
Pawley method[40] in the GSAS-II program[41] gave a good
quality of fit (Rwp = 2.26%, Rp =
1.56%; Figure a). The refined unit cell and
profile parameters obtained from the Pawley fitting procedure were then used in the
subsequent structure solution calculations.
Figure 2
Results from (a) Pawley fitting and (b) final Rietveld refinement of the powder XRD
data (background subtracted) for BPPP (red “+” marks,
experimental data; green line, calculated data; purple tick marks, peak positions; the
green line at the bottom shows the difference between the experimental and calculated
powder XRD data). In each case, the inset shows an expanded region of the powder XRD
data in the range of 2θ = 7.5–30°. Excluded regions correspond to
the positions of two impurity peaks, as discussed in the text.
Results from (a) Pawley fitting and (b) final Rietveld refinement of the powder XRD
data (background subtracted) for BPPP (red “+” marks,
experimental data; green line, calculated data; purple tick marks, peak positions; the
green line at the bottom shows the difference between the experimental and calculated
powder XRD data). In each case, the inset shows an expanded region of the powder XRD
data in the range of 2θ = 7.5–30°. Excluded regions correspond to
the positions of two impurity peaks, as discussed in the text.Structure solution was carried out using the direct-space genetic algorithm (GA)
technique incorporated in the program EAGER,[42−44] which has been applied to solve the crystal structures of materials
from a wide range of areas of application, including materials of biological
relevance[45−48] (e.g., amino acids and peptides), framework
structures,[49] products from solid-state reactions,[50] optoelectronic materials,[51] multi-component organic
materials,[52,53] and
polymorphic systems.[54] In the GA structure solution calculation, the
centrosymmetric BPPP molecule was fixed at a crystallographic inversion
center, and thus, the asymmetric unit corresponds to half the molecule, in line with the
assignment Z′ = 1/2 discussed above. The molecule was constructed
using standard bond lengths and bond angles, and trial crystal structures were defined by
a total of six structural variables: three orientational variables (corresponding to
rotation of the whole molecule around the inversion center) and three torsion-angle
variables (corresponding to rotation of each of the three independent
tert-butyl groups in the asymmetric unit around the
C–C(CH3)3 bond linking the tert-butyl
group to the aromatic ring). Each GA structure solution calculation involved the evolution
of 100 generations for a population of 100 structures, with 10 mating operations and 50
mutation operations carried out per generation. In total, 16 independent GA calculations
were carried out, with the same good-quality structure solution obtained in 9 cases.The best structure solution (i.e., the trial structure with the lowest
Rwp obtained in the GA structure solution calculations) was
used as the initial structural model for a geometry optimization calculation using
periodic DFT-D methodology (with fixed unit cell), carried out using the CASTEP
program.[25] The crystal structure obtained following the DFT-D
geometry optimization was used as the initial structural model for Rietveld refinement,
which was carried out using the GSAS-II program.[41] Standard restraints
were applied to bond lengths (74 restraints) and bond angles (151 restraints), and planar
restraints were applied to the aromatic ring system (4 restraints). The values of the
geometric restraints were derived from the molecular geometry obtained in the DFT-D
geometry optimization calculation carried out prior to Rietveld refinement. The final
Rietveld refinement gave a good fit to the powder XRD data
(Rwp = 2.29%, Rp = 1.60%; Figure b), comparable to the quality of fit obtained
in the profile-fitting procedure using the Pawley method described above, with the
following final refined parameters: a = 13.4973(8) Å,
b = 5.9743(5) Å, c = 29.7502(28) Å, β
= 94.627(10)°; V = 2391.13(19) Å3 (2θ range,
4–70°; 3867 profile points; 204 refined variables). As final validation, a
further periodic DFT-D geometry optimization calculation (with fixed unit cell) was
carried out on the crystal structure obtained in the Rietveld refinement. This calculation
led to only very minor atomic displacements (rmsd = 0.19 Å for non-hydrogen atoms),
confirming that the structure obtained in the final Rietveld refinement is very close to
an energy minimum and structurally reasonable.The final refined crystal structure of BPPP is shown in Figure (the cif file for this structure has been deposited in
the Cambridge Structural Database; deposition number, 2078994). In the crystal structure,
the molecules form stacks along the b-axis, with adjacent molecules along
the stack related to each other by translation. The plane of the aromatic ring system is
tilted significantly with respect to the stacking axis (the angle between the normal to
the aromatic plane and the b-axis is ca. 50.1°), and the
perpendicular distance between the aromatic planes of adjacent molecules is ca. 3.80
Å (note that the plane of the aromatic ring is parallel to the
a-axis). Adjacent stacks along the c-axis are related by
the 21-screw (parallel to the b-axis), and the planes of the
aromatic rings of molecules in adjacent stacks form an equal but opposite orientation with
respect to the b-axis, giving rise to the zigzag arrangement of molecular
planes when viewed in projection along the a-axis (see Figure a). Adjacent stacks along the a-axis
are related by translation (see Figure b) and
therefore have identical molecular orientations. We note that (as seen from the view along
the stacking axis in Figure b) the relative
positions and orientations of molecules in adjacent stacks give rise to an efficient
packing of the tert-butyl groups of adjacent molecules.
Figure 3
Crystal structure of BPPP viewed along (a) a-axis and
(b) b-axis.
Crystal structure of BPPP viewed along (a) a-axis and
(b) b-axis.
Scanning Tunneling Microscopy
In Figure , high-resolution micrographs show
the molecular features, as revealed by STM, on the BPOL (a), BPF
(b), and BPPP (c) molecular networks assembled on the Cu(111) surface, with
the corresponding molecular unit cell vectors
[r⃗1,
r⃗2, ϕ] reported in Table . From comparison of the STM images of the
different molecules, the tert-butyl groups can be easily identified as
protruding bright spots for all three molecules. In fact, the six
tert-butyl groups allow us to discriminate easily the molecular
boundaries and to determine quantitatively the molecular superlattices. Thus, we can
confidently interpret the main intra-molecular contrast in terms of topographic
effects.
Figure 4
High-resolution constant current STM micrographs for ordered monolayers of
BPOL (a), BPF (b), and BPPP (c) deposited on
Cu(111). A geometric model of the compounds is superimposed to the topographic images
as help to identify the single-molecule boundaries (identified by the peripheral six
tert-butyl groups) and orientation. The images were recorded at
room temperature using [80 pA; +220 mV], [90 pA; +260 mV], and [80 pA; −450 mV]
for the tunneling junctions, respectively. The principal substrate directions
[110] and [112] as well as the molecular unit vectors
r⃗1 and
r⃗2 are indicated as white
arrows.
Table 1
Molecular Superlattices Characterized by the Lengths
|r⃗1| and
|r⃗2| of the Unit Cell Vectors
and the Angle ϕ between Them
BPOL
BPF
BPPP
|r⃗1| [Å]
25.4 ± 0.2
27.3 ± 0.2
22.1 ± 0.2
|r⃗2| [Å]
15.2 ± 0.2
28.0 ± 0.2
16.2 ± 0.2
ϕ [deg]
89 ± 2
86 ± 2
58 ± 2
High-resolution constant current STM micrographs for ordered monolayers of
BPOL (a), BPF (b), and BPPP (c) deposited on
Cu(111). A geometric model of the compounds is superimposed to the topographic images
as help to identify the single-molecule boundaries (identified by the peripheral six
tert-butyl groups) and orientation. The images were recorded at
room temperature using [80 pA; +220 mV], [90 pA; +260 mV], and [80 pA; −450 mV]
for the tunneling junctions, respectively. The principal substrate directions
[110] and [112] as well as the molecular unit vectors
r⃗1 and
r⃗2 are indicated as white
arrows.In Figure a, the relative intensity associated
with the tert-butyl groups is not compatible with the strongly non-planar
structure of the BPOL isolated molecule in the gas phase with the two
perylene arms tilted by 63° with respect to each other.[24] By
looking carefully at the tert-butyl protrusions (six per molecule), we
see a rather small difference in the height ΔzMAX =
25–30 pm (see height distribution analysis in Supporting Information, Figure S11), also suggesting that perylenes should arrange in a flatter
configuration than in the isolated gas-phase molecule. This refined analysis also matches
the assumption of a more planar configuration described in the ARPES simulations,
discussed below.Regarding the adsorption geometry, BPOL is found to arrange in an
approximately rectangular superstructure, while the BPF compound shows an
almost square unit cell with a herringbone configuration. A rhomboidal brick-walled phase
geometry describes the self-assembly for BPPP. We note that the
BPPP arrangement bears some resemblance to the projection of the crystal
structure of BPPP along the b-axis (Figure
b), particularly regarding the presence of rows of molecules
with their long axes essentially parallel to each other. However, the manner in which
adjacent rows are displaced relative to each other is different, representing an
alternative arrangement for packing the tert-butyl groups of adjacent
molecules in the lateral direction compared to that observed (along the
a-axis) in the crystal structure.In order to understand the chiral properties of the full-coverage monolayer films studied
in this work, we note that we have used racemic mixtures, that is, equal amounts of
left-handed and right-handed enantiomers, of the chiral molecules BPOL and
BPF. The pro-chiral BPPP also shows self-organization into
chiral domains upon adsorption. We have observed chiral domains, each one displaying three
equivalent rotated domains according to the threefold symmetry of the Cu[111] substrate.
The structures formed after the deposition of BPOL molecules, as shown in
Figure , are characterized by two distinct
geometric domains covering the substrate’s atomically flat terraces. The molecular
domains extend for tens of nm (Figure a) and
show no tendency of intermixing molecules with opposite chirality. Domains with opposite
chirality are typically observed on the two sides of a substrate step, as in Figure b. Domain boundaries between opposite
chiralities can however also be observed on terraces, as shown in Figure
c,d. Besides the general tendency of molecules to decorate
the substrate’s terrace edges by aligning their long axis parallel to the step, we
have also observed the formation of chiral domains for BPPP (Figure a). The main difference with respect to
BPOL is that this molecule does not have an intrinsic chirality, but shows
a chiral assembly upon adsorption. We might argue that considering the deposition process
at the molecular size, the energetic gain given by the close packing of BPPP
molecules adsorbed with the same orientation can drive a similar adsorption in the nearby
areas and/or induce a flipping for those adsorbed with opposite orientation (Figure b). In the case of BPF (Figure a,b), the intrinsic chirality does not
clearly display different chiral domains by STM, and this is probably due to the square
lattice adsorption geometry. Moreover crystallographic data reported for BPF
and BPOL show a large decrease of the dihedral angle from 63° for
BPOL to 17° for BPF, where the dihedral angle between the
aryl moieties is drastically reduced by planarity of the furanyl framework,[24] thus making BPF molecules adsorb flat on the surface with a
further suppression of chirality-related effects.
Figure 5
BPOL assemblies on Cu(111). (a) Long-range ordering with some defects at
the border of chiral domains. (b) Step separating chiral domains on adjacent substrate
terraces. (c,d) Domain walls between two distinct chiral assemblies. In (d), a
cartoonic picture of the wall molecules (red- and green-colored for the two homochiral
arrangements) is superimposed as an overlayer to guide the eye.
Figure 6
Molecular domains for BPPP/Cu(111). (a) Molecular ordering in the
vicinity of the substrate’s steps is compromised, while extended molecular
networks are formed a few nm away from the terrace edges. (b) Evidence of coexisting
domains with opposite surface chirality. The superimposed molecular cartoonic pictures
(red and green for the two surface enantiomers) help in the pattern visualization.
From the combined analysis of the measured STM micrographs and LEED patterns, an angle
of 20° between the two chiral partners is confirmed.
Figure 7
BPF arrangement on Cu(111). Low-resolution (a) and high-resolution (b)
STM micrographs show the herringbone configuration for the square-like molecular
pattern with no evidence of chiral domains.
BPOL assemblies on Cu(111). (a) Long-range ordering with some defects at
the border of chiral domains. (b) Step separating chiral domains on adjacent substrate
terraces. (c,d) Domain walls between two distinct chiral assemblies. In (d), a
cartoonic picture of the wall molecules (red- and green-colored for the two homochiral
arrangements) is superimposed as an overlayer to guide the eye.Molecular domains for BPPP/Cu(111). (a) Molecular ordering in the
vicinity of the substrate’s steps is compromised, while extended molecular
networks are formed a few nm away from the terrace edges. (b) Evidence of coexisting
domains with opposite surface chirality. The superimposed molecular cartoonic pictures
(red and green for the two surface enantiomers) help in the pattern visualization.
From the combined analysis of the measured STM micrographs and LEED patterns, an angle
of 20° between the two chiral partners is confirmed.BPF arrangement on Cu(111). Low-resolution (a) and high-resolution (b)
STM micrographs show the herringbone configuration for the square-like molecular
pattern with no evidence of chiral domains.
Low-Energy Electron Diffraction
Figure displays the LEED diffractograms of the
three molecular species, taken in the energy range of 23–27 eV, after depositing 1
ML on Cu(111). The pattern visible in this energy range corresponds to the large molecular
unit vectors as measured by STM and reported in Table , while the substrate Cu(111) pattern (unit vector a⃗ =
2.58 Å, whose spots have larger separation in the reciprocal space) can be
appreciated for E > 50 eV (See Figure S10 in Supporting Information). The LEED pattern simulation with the
given parameters allows comparison with the experimental data. Considering the threefold
p3m1 symmetry for the Cu(111) substrate, we have
considered the coexistence of six equivalent domains for each of the three molecular
lattices (rectangular for BPOL, square for BPF, and rhomboidal
for BPPP). In Figure , the
superimposed simulated spot distribution (delimited by the dashed lines) is in good
agreement with the experimental results and designates the incommensurate molecular
lattices. Using the parameters obtained by STM (Table ) as input for the LEED superstructure evaluation, we obtain the matrices
(matrix elements
reported with an error of ±0.1). The corresponding areas of the molecular
superlattice are found to be 386 ± 8 Å2, 764 ± 10
Å2, and 310 ± 7 Å2 for BPOL,
BPF, and BPPP, respectively.
Figure 8
LEED diffractograms for 1 ML of BPOL (a), BPF (b), and
BPPP (c) deposited on Cu(111) taken at electron energies of 24.0, 26.5,
and 23.9 eV, respectively. Overlaid on the three images, we show a portion of the
simulated pattern delimited by dashed lines as well as the substrate’s
high-symmetry directions (K and M corresponding to
[110] and [112], respectively).
LEED diffractograms for 1 ML of BPOL (a), BPF (b), and
BPPP (c) deposited on Cu(111) taken at electron energies of 24.0, 26.5,
and 23.9 eV, respectively. Overlaid on the three images, we show a portion of the
simulated pattern delimited by dashed lines as well as the substrate’s
high-symmetry directions (K and M corresponding to
[110] and [112], respectively).
Photoemission Results
In Figure , we show that for
k∥ values of approximately 0.8
Å–1, following the curves from the Fermi level to higher binding
energies, no structures are present before the substrate states, while the story is
different at 1.5 Å–1 (half transparent vs fully colored lines). The
HOMO positions are found at 1.24, 1.40, and 1.00 eV for BPOL,
BPF, and BPPP (yellow, red, and blue curves, respectively). In
addition, for the BPPP case, a clear peak is found at a binding energy of
1.80 eV, which is tentatively attributed to the HOMO – 1 level. No evidence of
LUMO-filled states in the vicinity of the Fermi level together with the large
HOMO–LUMO gaps for the same compounds, as has been reported by Miletić et
al.,[23] indicates a limited charge transfer from the substrate with a
possible band alignment of the substrate Fermi level in the middle of the surface
HOMO–LUMO gap.
Figure 9
Integrated UPS spectra taken at |k∥| values of 0.8
Å–1 (half transparent traces) and 1.5
Å–1 (fully colored traces). Molecular-related features (HOMOs
are indicated by arrows) are present in the binding energy range of 0.9–2.0 eV
(labeled traces BPOL, BPF, and BPPP), while the
spectrum taken on the clean Cu substrates is flat.
Integrated UPS spectra taken at |k∥| values of 0.8
Å–1 (half transparent traces) and 1.5
Å–1 (fully colored traces). Molecular-related features (HOMOs
are indicated by arrows) are present in the binding energy range of 0.9–2.0 eV
(labeled traces BPOL, BPF, and BPPP), while the
spectrum taken on the clean Cu substrates is flat.A number of experimental and theoretical works on different molecular structures have
been published by following the orbital tomography methodology.[15,31,55−60] In our case studies, we partially meet the
requirements for the PW final-state assumption since we show experimental data on
quasi-planar and planar self-assembled large π-conjugated molecules. The deviation
from strictly planar molecules may be the origin of the discrepancy between the
experimental and simulated results.Photoemission simulations have been carried out for the isolated molecules within the PW
approximation, with the initial state being supplied by DFT calculations (i.e., the
well-known photoemission tomography method[14,61]). The geometric structures of gas-phase BPPP
and BPF are comparatively flat, so we neglected the inevitable change of
geometry upon adsorption on the substrate. Gas-phase BPOL is, however,
non-planar, and significant changes upon adsorption on the Cu(111) surface are expected.
The STM images in Figure also appear to
indicate this, and we think that the flattened (even if not completely) molecule (also
shown in Figure ) is in better agreement with
the STM measurements. As can be seen from the EDC in Figure , two peaks are discernible for BPPP (which we assign
to the HOMO and HOMO – 1 states), while there is only one peak for BPF
and BPOL (which we assign to their corresponding HOMO levels). By taking into
account the geometrical arrangement deduced by the combined STM and LEED analysis, we have
proceeded in the orbital map reconstruction as follows.The results summarized in Figure describe
the case of the BPOL molecule for which we must consider two enantiomers with
their corresponding lattice domain orientations; since the long molecular axis for both
enantiomers is parallel to the [110] direction, the corresponding overall HOMO map is
given by summing the single oriented orbital maps with the rotated ±120°
accounting for the threefold substrate’s symmetry (symmetrization). The constant
energy cuts are compared to the clean substrate (shown in Figure a). The match between the simulated and experimental maps (Figure b,c) is acceptable if we consider that in
this case, the non-planar adsorption invalidates the assumptions of orbital tomography. In
the experimental map in Figure b, we observe
interface states, also visible on the Fermi surface (Eb = 0
eV) from features of substrate photoelectrons diffracted by the molecular lattice. These
features have already been described, as a result of final-state effects, for other
π-conjugated molecules assembled in ordered networks[62,63] (see Figure S2 in Supporting Information).
Figure 10
Constant energy cut at BE = 1.24 eV on the clean Cu(111) (a) and for
BPOL/Cu(111) (b). The corresponding HOMO simulation is shown in (c).
All plots have been oriented to display k∥ and
k∥ aligned along the substrate’s high-symmetry directions
(M and K corresponding to [112] and
[110], respectively).
Constant energy cut at BE = 1.24 eV on the clean Cu(111) (a) and for
BPOL/Cu(111) (b). The corresponding HOMO simulation is shown in (c).
All plots have been oriented to display k∥ and
k∥ aligned along the substrate’s high-symmetry directions
(M and K corresponding to [112] and
[110], respectively).In the BPF case, LEED and STM results confirm the hypothesis of a
square-like pattern with herringbone layout and and a slight (∼5°)
misorientation from the [110] direction. If we consider that in both chiral herringbone
domain lattices the two molecules are adsorbed with 60° angular displacements, we can
construct the overall photoemission map by summing up the four single-molecule orbital
maps (0–60°), two +5° and two −5°, rotated with respect to
the [110] direction and then proceed with the threefold symmetrization (details in
Figure S4). Also in this case, the small discrepancy between the
experimental and simulated maps can be ascribed to the non-flatness of the molecules even
if this aspect is not as strong as for BPOL, with a better agreement between
experiment and simulation, as shown in Figure .
Figure 11
Constant energy cut at BE = 1.4 eV on the clean Cu(111) (a) and for
BPF/Cu(111) (b). The corresponding HOMO simulation is shown in (c). All
plots have been oriented to display k∥ and
k∥ aligned along the substrate’s high-symmetry directions
(M and K corresponding to [112] and
[110], respectively).
Constant energy cut at BE = 1.4 eV on the clean Cu(111) (a) and for
BPF/Cu(111) (b). The corresponding HOMO simulation is shown in (c). All
plots have been oriented to display k∥ and
k∥ aligned along the substrate’s high-symmetry directions
(M and K corresponding to [112] and
[110], respectively).The case of BPPP is peculiar and worth discussing in some detail. The two
pro-chiral forms adsorb on the surface forming two distinct domains (see Figure ) with the same superlattice parameters
(BPPP column of Table ) but with
different orientations with respect to the substrate high-symmetry directions. In
particular, there is a 20° angle between the longer axis of one chiral lattice and
that of the mirror one. With L and R enantiomers being
the two pro-chiral partners, they must be oriented with their long molecular axis rotated
clockwise by 20° and 40°, respectively. Inversely, if one considers
anti-clockwise rotations, the comparison of the experimental and simulated patterns gives
a full correspondence, as shown in Figure ,
only if L is rotated by 40° and R by 20°. A
schematic for L and R orientations with details on the
map reconstruction is shown in Supporting Information (Figures S5 and S6). Referring to this analysis, we conclude that the
L(R) molecules adsorb with a sixfold symmetry with a
clockwise rotation of 20°(40°) from the [110] substrate direction.
Figure 12
Constant energy cut at BE = 1.0 [1.8] eV on the clean Cu(111) (a,d) and for
BPPP/Cu(111) (b,e). The corresponding HOMO [HOMO – 1] simulation
is shown in (c,f). All plots have been oriented to display k∥ and
k∥ aligned along the substrate’s high-symmetry directions
(M and K corresponding to [112] and
[110], respectively).
Constant energy cut at BE = 1.0 [1.8] eV on the clean Cu(111) (a,d) and for
BPPP/Cu(111) (b,e). The corresponding HOMO [HOMO – 1] simulation
is shown in (c,f). All plots have been oriented to display k∥ and
k∥ aligned along the substrate’s high-symmetry directions
(M and K corresponding to [112] and
[110], respectively).As can be seen from Figures , 11, and 12, the gas-phase simulations match the main
features of the measured momentum maps. It is worth noting that there is a slight
geometrical deviation of the simulated maps (sixfold symmetric) with respect to the
measured ones (threefold symmetric). For the simulations, the substrate is taken into
consideration only for the surface symmetry taken as a reference for the molecular
orientation. It is therefore reasonable to obtain a sixfold symmetry as the molecule is
twofold symmetric, at least approximately. To some extent, the sixfold symmetry is also
visible in the measured maps, where the contribution of the threefold symmetric underlying
surface states cannot be disentangled from those of the molecular orbitals. This means
that we must take into consideration that the emission of the overlayer is modified due to
hybridization with the substrate. In addition, the moderate agreement between the
calculated and experimental maps together with the EDC of Figure indicates that the LUMO remains empty upon adsorption.
Conclusions
In summary, we have demonstrated that, by means of surface science methodologies combining
structural and electronic state information, it is possible to characterize the electronic
structure of large molecules that are able to assemble in large ordered networks. In
particular, we have investigated O-doped PAHs (BPOL, BPF, and
BPPP) in which fine tuning of both the π-extension of the carbon
scaffold and the oxygen linkages is responsible for slight modifications of the HOMO and
LUMO state positions. STM investigation of this class of molecules has revealed the presence
of chiral domains, and the patches composed of single enantiomers do not intermix,
indicating the mutual recognition of molecules during the self-assembling process.The position in the energy and parallel momentum space of the HOMOs has been revealed with
no direct information on the HOMO–LUMO gaps since no LUMO filling has been observed
after the absorption on the Cu(111) substrate. Nevertheless, considerations on the gap
measured for the same compounds under other conditions suggest the possible molecular band
alignment with the substrate Fermi level in the middle of the molecular gap. Moreover, the
tunability that can be achieved by synthetic modification of the compound geometry allows a
possible benchmark for the reconstruction methods of molecular orbitals from photoemission
data.Eventually, by means of the PW approximation or more sophisticated methodologies, it would
be possible to use the experimental electronic fingerprints measured by orbital tomography
to reconstruct the density of states of the molecular network and relate it with the actual
adsorption phase including the possible hybridization with the substrate which in turn can
modify its electronic structure in response to the overlayer.
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