| Literature DB >> 34791286 |
Konami Nagano1, Takashi Kamimura2, Gota Kawai1.
Abstract
Interaction analysis between small molecules and RNA as well as structure determination of RNA-small molecule complexes will be the clues to search for compounds that bind to specific mRNA or non-coding RNA in drug discovery. In this study, the RNA-binding ability of a fluoroquinolone derivative, KG022, was examined against single-residue bulge-containing hairpin RNAs as RNA models. Nuclear magnetic resonance analysis indicated that KG022 interacts with the RNAs in the vicinity of the bulge residue, with preferring C and G as the bulge residues. The solution structures of the RNA-KG022 complexes showed that the KG022 binds to the RNAs at the bulge-out regions. Each substituent in KG022 interacts with specific position of RNAs around the bulge-out region probably contributing the specificity of the binding. This work provides a novel member for the RNA-targeted small molecules.Entities:
Keywords: NMR; RNA; fluoroquinolone; interaction; small molecule
Mesh:
Substances:
Year: 2022 PMID: 34791286 PMCID: PMC8627355 DOI: 10.1093/jb/mvab124
Source DB: PubMed Journal: J Biochem ISSN: 0021-924X Impact factor: 3.387
Initial laboratory values and peaked values for the inflammatory markers.
| Variable | Initial values | Reference ranges |
|---|---|---|
| HbA1c (%) | 13 | 4–6 |
| pH | 6.9 | 7.36–7.44 |
| Bicarbonate (mEq/L) | 6 | 21–31 |
| Glucose (mg/dL) | 1858 | 70–110 |
| Beta-hydroxybutyrate (mg/dL) | 46 | 0.2–2.8 |
| Anion gap (mEq/L) | 22 | 3–10 |
| Effective osmolarity (mOsm/kg) | 345 | 283–299 |
| WBC (K/mm3) | 9.7 | 4.5–11 |
| Hemoglobin (g/dL) | 15.7 | 12–16 |
| Platelets (K/mm3) | 202 | 140–440 |
| Sodium (mEq/L) | 121 | 135–145 |
| Potassium (mEq/L) | 6.1 | 3.5–5 |
| Chloride (mEq/L) | 93 | 98-107 |
| Phosphorous (mg/dL) | <1 | 2.5–5 |
| BUN (mg/dL) | 47 | 7–23 |
| Creatinine (mg/dL) | 4.5 | 0.6–1.3 |
| Amylase (U/L) | 120 | 40–140 |
| Lipase (U/L) | 666 | 0–160 |
| Troponin (ng/L) | 343 (peak: 481) | 3–17 |
| CRP (mg/L) | 210 (peak: 362) | <10 |
| Ferritin (ng/mL) | 172 (peak: 1546) | 12–300 |
| LDH (U/L) | 120 (peak: 2295) | 140–271 |
| D-dimer ( | 4.15 (peak: 12.26) | <0.5 |
| Fibrinogen (mg/dL) | 175 (peak: 516) | 183–503 |
| CPK (U/L) | 210 (peak: 10375) | 20-200 |
Figure 1CT of the lungs demonstrates bilateral mid- and lower lung patchy consolidations and ground-glass opacities extending into the bilateral lung bases. Bilateral air bronchograms are noted.
Figure 2Inflammatory markers over time.