Literature DB >> 34788071

Novel Insights into Dimethylsulfoniopropionate Catabolism by Cultivable Bacteria in the Arctic Kongsfjorden.

Shan Zhang1,2,3, Hai-Yan Cao1, Nan Zhang4, Zhao-Jie Teng1, Yang Yu1, Zhi-Bin Wang1, Peng Wang2,3, Hui-Hui Fu2, Xiu-Lan Chen1,3, Yu-Zhong Zhang1,2,3, Chun-Yang Li2,3.   

Abstract

Dimethylsulfoniopropionate (DMSP) is one of the most abundant organic sulfur compounds in the oceans, which is mainly degraded by bacteria through two pathways, a cleavage pathway and a demethylation pathway. Its volatile catabolites dimethyl sulfide (DMS) and methanethiol (MT) in these pathways play important roles in the global sulfur cycle and have potential influences on the global climate. Intense DMS/DMSP cycling occurs in the Arctic. However, little is known about the diversity of cultivable DMSP-catabolizing bacteria in the Arctic and how they catabolize DMSP. Here, we screened DMSP-catabolizing bacteria from Arctic samples and found that bacteria of four genera (Psychrobacter, Pseudoalteromonas, Alteromonas, and Vibrio) could grow with DMSP as the sole carbon source, among which Psychrobacter and Pseudoalteromonas are predominant. Four representative strains (Psychrobacter sp. K31L, Pseudoalteromonas sp. K222D, Alteromonas sp. K632G, and Vibrio sp. G41H) from different genera were selected to probe their DMSP catabolic pathways. All these strains produce DMS and MT simultaneously during their growth on DMSP, indicating that all strains likely possess the two DMSP catabolic pathways. On the basis of genomic and biochemical analyses, the DMSP catabolic pathways in these strains were proposed. Bioinformatic analysis indicated that most Psychrobacter and Vibrio bacteria have the potential to catabolize DMSP via the demethylation pathway and that only a small portion of Psychrobacter strains may catabolize DMSP via the cleavage pathway. This study provides novel insights into DMSP catabolism in marine bacteria. IMPORTANCE Dimethylsulfoniopropionate (DMSP) is abundant in the oceans. The catabolism of DMSP is an important step of the global sulfur cycle. Although Gammaproteobacteria are widespread in the oceans, the contribution of Gammaproteobacteria in global DMSP catabolism is not fully understood. Here, we found that bacteria of four genera belonging to Gammaproteobacteria (Psychrobacter, Pseudoalteromonas, Alteromonas and Vibrio), which were isolated from Arctic samples, were able to grow on DMSP. The DMSP catabolic pathways of representative strains were proposed. Bioinformatic analysis indicates that most Psychrobacter and Vibrio bacteria have the potential to catabolize DMSP via the demethylation pathway and that only a small portion of Psychrobacter strains may catabolize DMSP via the cleavage pathway. Our results suggest that novel DMSP dethiomethylases/demethylases may exist in Pseudoalteromonas, Alteromonas, and Vibrio and that Gammaproteobacteria may be important participants in the marine environment, especially in polar DMSP cycling.

Entities:  

Keywords:  DMSP; Gammaproteobacteria; catabolic pathways; marine bacteria; the Arctic

Mesh:

Substances:

Year:  2021        PMID: 34788071      PMCID: PMC8788697          DOI: 10.1128/AEM.01806-21

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   5.005


  43 in total

1.  Complete genome sequence of Rhodococcus sp. NJ-530, a DMSP-degrading actinobacterium isolated from Antarctic sea ice.

Authors:  Changfeng Qu; Wenyu Wang; Jianjun Dong; Xixi Wang; Xuxu Gao; Honghai Zhang; Zhou Zheng; Hua Yin; Jinlai Miao
Journal:  3 Biotech       Date:  2019-09-18       Impact factor: 2.406

2.  Phylogenetic analysis of culturable dimethyl sulfide-producing bacteria from a spartina-dominated salt marsh and estuarine water.

Authors:  J H Ansede; R Friedman; D C Yoch
Journal:  Appl Environ Microbiol       Date:  2001-03       Impact factor: 4.792

3.  MARINE SULFUR CYCLE. Identification of the algal dimethyl sulfide-releasing enzyme: A missing link in the marine sulfur cycle.

Authors:  Uria Alcolombri; Shifra Ben-Dor; Ester Feldmesser; Yishai Levin; Dan S Tawfik; Assaf Vardi
Journal:  Science       Date:  2015-06-26       Impact factor: 47.728

4.  Identification of genes for dimethyl sulfide production in bacteria in the gut of Atlantic Herring (Clupea harengus).

Authors:  Andrew R J Curson; Matthew J Sullivan; Jonathan D Todd; Andrew W B Johnston
Journal:  ISME J       Date:  2009-08-27       Impact factor: 10.302

5.  Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi.

Authors:  Chris R Reisch; Mary Ann Moran; William B Whitman
Journal:  J Bacteriol       Date:  2008-10-10       Impact factor: 3.490

6.  DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton.

Authors:  Andrew R J Curson; Beth T Williams; Benjamin J Pinchbeck; Leanne P Sims; Ana Bermejo Martínez; Peter Paolo L Rivera; Deepak Kumaresan; Elena Mercadé; Lewis G Spurgin; Ornella Carrión; Simon Moxon; Rose Ann Cattolico; Unnikrishnan Kuzhiumparambil; Paul Guagliardo; Peta L Clode; Jean-Baptiste Raina; Jonathan D Todd
Journal:  Nat Microbiol       Date:  2018-02-26       Impact factor: 17.745

7.  Molecular dissection of bacterial acrylate catabolism--unexpected links with dimethylsulfoniopropionate catabolism and dimethyl sulfide production.

Authors:  Jonathan D Todd; Andrew R J Curson; Nefeli Nikolaidou-Katsaraidou; Charles A Brearley; Nicholas J Watmough; Yohan Chan; Philip C B Page; Lei Sun; Andrew W B Johnston
Journal:  Environ Microbiol       Date:  2009-10-05       Impact factor: 5.491

8.  DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria.

Authors:  Jonathan D Todd; Andrew R J Curson; Mark Kirkwood; Matthew J Sullivan; Robert T Green; Andrew W B Johnston
Journal:  Environ Microbiol       Date:  2010-09-30       Impact factor: 5.491

9.  A novel ATP dependent dimethylsulfoniopropionate lyase in bacteria that releases dimethyl sulfide and acryloyl-CoA.

Authors:  Chun-Yang Li; Xiu-Juan Wang; Xiu-Lan Chen; Qi Sheng; Shan Zhang; Peng Wang; Mussa Quareshy; Branko Rihtman; Xuan Shao; Chao Gao; Fuchuan Li; Shengying Li; Weipeng Zhang; Xiao-Hua Zhang; Gui-Peng Yang; Jonathan D Todd; Yin Chen; Yu-Zhong Zhang
Journal:  Elife       Date:  2021-05-10       Impact factor: 8.140

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