Literature DB >> 34785728

Understanding the role of the CB1 toggle switch in interaction networks using molecular dynamics simulation.

Sangho Ji1, Wonjin Yang1, Wookyung Yu2,3.   

Abstract

The cannabinoid receptor 1 (CB1) is a class A G-protein coupled receptor (GPCR) that can exert various effects on the human body through the endocannabinoid system. Understanding CB1 activation has many benefits for the medical use of cannabinoids. A previous study reported that CB1 has two notable residues referred to as the toggle switch, F3.36 and W6.48, which are important for its activation mechanism. We performed a molecular dynamics simulation with a mutation in the toggle switch to examine its role in active and inactive states. We also examined structural changes, the residue-residue interaction network, and the interaction network among helices and loops of wildtype and mutant CB1 for both activation states. As a result, we found that the energetic changes in the hydrogen-bond network of the Na+ pocket, extracellular N-terminus-TM2-ECL1-TM3 interface including D2.63-K3.28 salt-bridge, and extracellular ECL2-TM5-ECL3-TM6 interface directly linked to the toggle switch contribute to the stability of CB1 by the broken aromatic interaction of the toggle switch. It makes the conformation of inactive CB1 receptor to be unstable. Our study explained the role of the toggle switch regarding the energetic interactions related to the Na+ pocket and extracellular loop interfaces, which could contribute to a better understanding of the activation mechanism of CB1.
© 2021. The Author(s).

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Year:  2021        PMID: 34785728      PMCID: PMC8595625          DOI: 10.1038/s41598-021-01767-5

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  36 in total

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Authors:  Holger Gohlke; David A Case
Journal:  J Comput Chem       Date:  2004-01-30       Impact factor: 3.376

2.  Development of a 3D model for the human cannabinoid CB1 receptor.

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Journal:  J Med Chem       Date:  2004-06-03       Impact factor: 7.446

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Authors:  Benjamin Webb; Andrej Sali
Journal:  Curr Protoc Bioinformatics       Date:  2016-06-20

5.  Structural mimicry in class A G protein-coupled receptor rotamer toggle switches: the importance of the F3.36(201)/W6.48(357) interaction in cannabinoid CB1 receptor activation.

Authors:  Sean D McAllister; Dow P Hurst; Judy Barnett-Norris; Diane Lynch; Patricia H Reggio; Mary E Abood
Journal:  J Biol Chem       Date:  2004-08-23       Impact factor: 5.157

6.  Computationally-predicted CB1 cannabinoid receptor mutants show distinct patterns of salt-bridges that correlate with their level of constitutive activity reflected in G protein coupling levels, thermal stability, and ligand binding.

Authors:  Kwang H Ahn; Caitlin E Scott; Ravinder Abrol; William A Goddard; Debra A Kendall
Journal:  Proteins       Date:  2013-06-14

7.  Cannabinoid receptor localization in brain.

Authors:  M Herkenham; A B Lynn; M D Little; M R Johnson; L S Melvin; B R de Costa; K C Rice
Journal:  Proc Natl Acad Sci U S A       Date:  1990-03       Impact factor: 11.205

8.  Structural basis for allosteric regulation of GPCRs by sodium ions.

Authors:  Wei Liu; Eugene Chun; Aaron A Thompson; Pavel Chubukov; Fei Xu; Vsevolod Katritch; Gye Won Han; Christopher B Roth; Laura H Heitman; Adriaan P IJzerman; Vadim Cherezov; Raymond C Stevens
Journal:  Science       Date:  2012-07-13       Impact factor: 47.728

9.  OPM database and PPM web server: resources for positioning of proteins in membranes.

Authors:  Mikhail A Lomize; Irina D Pogozheva; Hyeon Joo; Henry I Mosberg; Andrei L Lomize
Journal:  Nucleic Acids Res       Date:  2011-09-02       Impact factor: 16.971

Review 10.  Structural Insights into CB1 Receptor Biased Signaling.

Authors:  Rufaida Al-Zoubi; Paula Morales; Patricia H Reggio
Journal:  Int J Mol Sci       Date:  2019-04-13       Impact factor: 5.923

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