Literature DB >> 34783463

Urine Proteomics and Renal Single-Cell Transcriptomics Implicate Interleukin-16 in Lupus Nephritis.

Andrea Fava1, Deepak A Rao2, Chandra Mohan3, Ting Zhang3, Avi Rosenberg1, Paride Fenaroli4, H Michael Belmont5, Peter Izmirly5, Robert Clancy5, Jose Monroy Trujillo1, Derek Fine1, Arnon Arazi6, Celine C Berthier7, Anne Davidson8, Judith A James9, Betty Diamond6, Nir Hacohen10, David Wofsy11, Soumya Raychaudhuri12, William Apruzzese2, Jill Buyon5, Michelle Petri1.   

Abstract

OBJECTIVE: Current lupus nephritis (LN) treatments are effective in only 30% of patients, emphasizing the need for novel therapeutic strategies. We undertook this study to develop mechanistic hypotheses and explore novel biomarkers by analyzing the longitudinal urinary proteomic profiles in LN patients undergoing treatment.
METHODS: We quantified 1,000 urinary proteins in 30 patients with LN at the time of the diagnostic renal biopsy and after 3, 6, and 12 months. The proteins and molecular pathways detected in the urine proteome were then analyzed with respect to baseline clinical features and longitudinal trajectories. The intrarenal expression of candidate biomarkers was evaluated using single-cell transcriptomics of renal biopsy sections from LN patients.
RESULTS: Our analysis revealed multiple biologic pathways, including chemotaxis, neutrophil activation, platelet degranulation, and extracellular matrix organization, which could be noninvasively quantified and monitored in the urine. We identified 237 urinary biomarkers associated with LN, as compared to controls without systemic lupus erythematosus. Interleukin-16 (IL-16), CD163, and transforming growth factor β mirrored intrarenal nephritis activity. Response to treatment was paralleled by a reduction in urinary IL-16, a CD4 ligand with proinflammatory and chemotactic properties. Single-cell RNA sequencing independently demonstrated that IL16 is the second most expressed cytokine by most infiltrating immune cells in LN kidneys. IL-16-producing cells were found at key sites of kidney injury.
CONCLUSION: Urine proteomics may profoundly change the diagnosis and management of LN by noninvasively monitoring active intrarenal biologic pathways. These findings implicate IL-16 in LN pathogenesis, designating it as a potentially treatable target and biomarker.
© 2021 American College of Rheumatology.

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Year:  2022        PMID: 34783463      PMCID: PMC9050800          DOI: 10.1002/art.42023

Source DB:  PubMed          Journal:  Arthritis Rheumatol        ISSN: 2326-5191            Impact factor:   15.483


  47 in total

1.  IL-16 expression is increased in the skin and sera of patients with systemic sclerosis.

Authors:  Kazuo Kawabata; Takamitsu Makino; Katsunari Makino; Ikko Kajihara; Satoshi Fukushima; Hironobu Ihn
Journal:  Rheumatology (Oxford)       Date:  2020-03-01       Impact factor: 7.580

Review 2.  Biomarkers of lupus nephritis histology and flare: deciphering the relevant amidst the noise.

Authors:  Daniel J Birmingham; Michael Merchant; Sushrut S Waikar; Haikady Nagaraja; Jon B Klein; Brad H Rovin
Journal:  Nephrol Dial Transplant       Date:  2017-01-01       Impact factor: 5.992

3.  Targeted urine proteomics in lupus nephritis - a meta-analysis.

Authors:  Ting Zhang; Valeria Duran; Kamala Vanarsa; Chandra Mohan
Journal:  Expert Rev Proteomics       Date:  2021-01-19       Impact factor: 3.940

Review 4.  Urine retinol-binding protein 4: a functional biomarker of the proximal renal tubule.

Authors:  Anthony G W Norden; Marta Lapsley; Robert J Unwin
Journal:  Adv Clin Chem       Date:  2014       Impact factor: 5.394

5.  The synthesis by fine-needle aspiration biopsy cultures of IL-7, IL-16 and IL-18 is significantly associated with acute rejection in kidney transplants.

Authors:  José Gerardo Gonçalves de Oliveira; Paula Dias Pinto Xavier; Susana Moreira Sampaio; Isabel Salomé Tavares; Armando Augusto Mendes
Journal:  Nephron       Date:  2002       Impact factor: 2.847

6.  Processing and activation of pro-interleukin-16 by caspase-3.

Authors:  Y Zhang; D M Center; D M Wu; W W Cruikshank; J Yuan; D W Andrews; H Kornfeld
Journal:  J Biol Chem       Date:  1998-01-09       Impact factor: 5.157

7.  Measurement of urinary chemokine and growth factor messenger RNAs: a noninvasive monitoring in lupus nephritis.

Authors:  Y Avihingsanon; P Phumesin; T Benjachat; S Akkasilpa; V Kittikowit; K Praditpornsilpa; J Wongpiyabavorn; S Eiam-Ong; T Hemachudha; K Tungsanga; N Hirankarn
Journal:  Kidney Int       Date:  2006-02       Impact factor: 10.612

8.  Value of repeat biopsy in lupus nephritis flares.

Authors:  G Greloni; M Scolnik; J Marin; E Lancioni; C Quiroz; J Zacariaz; P De la Iglesia Niveyro; S Christiansen; M A Pierangelo; C F Varela; G J Rosa-Diez; L J Catoggio; E R Soriano
Journal:  Lupus Sci Med       Date:  2014-04-01

9.  Comprehensive aptamer-based screening identifies a spectrum of urinary biomarkers of lupus nephritis across ethnicities.

Authors:  Samantha Stanley; Kamala Vanarsa; Samar Soliman; Deena Habazi; Claudia Pedroza; Gabriel Gidley; Ting Zhang; Shree Mohan; Evan Der; Hemant Suryawanshi; Thomas Tuschl; Jill Buyon; Chaim Putterman; Chi Chiu Mok; Michelle Petri; Ramesh Saxena; Chandra Mohan
Journal:  Nat Commun       Date:  2020-05-04       Impact factor: 14.919

10.  CD163+ M2c-like macrophages predominate in renal biopsies from patients with lupus nephritis.

Authors:  Gregor Olmes; Maike Büttner-Herold; Fulvia Ferrazzi; Luitpold Distel; Kerstin Amann; Christoph Daniel
Journal:  Arthritis Res Ther       Date:  2016-04-18       Impact factor: 5.156

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  6 in total

1.  Serum and Urine Interferon Gamma-Induced Protein 10 (IP-10) Levels in Lupus Nephritis.

Authors:  Makayla P Brady; Saiteja Chava; Shweta Tandon; Madhavi J Rane; Michelle T Barati; Dawn J Caster; David W Powell
Journal:  J Clin Med       Date:  2022-06-03       Impact factor: 4.964

2.  One-third of patients with lupus nephritis classified as complete responders continue to accrue progressive renal damage despite resolution of proteinuria.

Authors:  Emma Weeding; Andrea Fava; Laurence Magder; Daniel Goldman; Michelle Petri
Journal:  Lupus Sci Med       Date:  2022-04

3.  Systematic identification of key extracellular proteins as the potential biomarkers in lupus nephritis.

Authors:  Xue Zhou; Yuefeng Zhang; Ning Wang
Journal:  Front Immunol       Date:  2022-07-28       Impact factor: 8.786

4.  Interleukin (IL) 16: a candidate urinary biomarker for proliferative lupus nephritis.

Authors:  Vilija Oke; Iva Gunnarsson; Aliisa Häyry; Francesca Faustini; Agneta Zickert; Anders Larsson; Timothy B Niewold; Elisabet Svenungsson
Journal:  Lupus Sci Med       Date:  2022-09

Review 5.  Current Insights on Biomarkers in Lupus Nephritis: A Systematic Review of the Literature.

Authors:  Leonardo Palazzo; Julius Lindblom; Chandra Mohan; Ioannis Parodis
Journal:  J Clin Med       Date:  2022-09-28       Impact factor: 4.964

6.  Urine proteomic insights from the belimumab in lupus nephritis trial.

Authors:  Emma Weeding; Andrea Fava; Chandra Mohan; Laurence Magder; Daniel Goldman; Michelle Petri
Journal:  Lupus Sci Med       Date:  2022-09
  6 in total

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