| Literature DB >> 34782539 |
Venkatesan Vasuki1, Sugeerappa Laxmanappa Hoti2, Swaminathan Subramanian1, Abdul Mabood Khan3, Velayudham Thenmozhi4, Nagarajan Shriram Ananganallur5, Namita Mahapatra6, Ramalingam Balasubramaniyan1.
Abstract
Background & objectives: An infective stage specific reverse transcriptase-polymerase chain reaction (RT-PCR) assay utilizing the abundant larval transcript-3 (Alt-3) gene of Wuchereria bancrofti was developed at ICMR-VCRC, Puducherry and found to be stage specific, and sensitive upon validation in the laboratory. This study was aimed at independently evaluating this assay for its utility as a monitoring/surveillance tool in the operational programme for elimination of lymphatic filariasis (LF) by four national research laboratories.Entities:
Keywords: Infective (L3) stage; L3 specific reverse transcriptase-polymerase chain reaction assay; Wuchereria bancrofti; multi-centric evaluation
Mesh:
Substances:
Year: 2021 PMID: 34782539 PMCID: PMC8715687 DOI: 10.4103/ijmr.IJMR_713_19
Source DB: PubMed Journal: Indian J Med Res ISSN: 0971-5916 Impact factor: 2.375
Fig. 1Design of the multi-centric evaluation of a stage-specific RT-PCR assay for the detection of infective (L3) stage Wuchereria bancrofti in vectors.
Fig. 2Stage specificity of L3-specific RT-PCR in detecting the infective stage W. bancrofti in pools of mosquitoes containing mixed stages of W. bancrofti in Cx. quinquefasciatus . Lane 1- Molecular weight marker (100 bp); lanes 2, 6, 8, 11, 12, 14 – mosquito pools with mixed stages without L3; lanes 3, 4, 5, 7, 9, 10, 13, 15 – Mosquito pools with mixed stages including L3.
Stage specificity of the L3 specific reverse transcription PCR assay in detecting the infective (L3) stage W. bancrofti in pools of Cx. quinquefasciatus mosquitoes containing mixed stages of W. bancrofti parasites
| Name of the centre | Number of positive pools | Number detected as positive (sensitivity %) | Number of negative pools | Number detected as negative (specificity %) |
|---|---|---|---|---|
| CRME, Madurai | 8 | 8 (100) | 6 | 6 (100) |
| ICMR-RMRC, Dibrugarh | 8 | 8 (100) | 6 | 6 (100) |
| ICMR-RMRC, Port Blair | 8 | 8 (100) | 6 | 6 (100) |
| ICMR-RMRC, Bhubaneswar | 8 | 8 (100) | 6 | 6 (100) |
| Overall | 32 | 32 (100) | 24 | 24 (100) |
CRME, Centre for Research in Medical Entomology; RMRC, Regional Medical Research Centre
Fig. 3Specificity and sensitivity of L3-specific RT-PCR in detecting the infective stage W. bancrofti in Cx. quinquefasciatus by the participant. Lane 1: Molecular weight marker (100 bp); lanes 2, 3, 4; pools containing Mf, L1, L2; lanes 5-10: pools containing L3 larvae; lanes 11-15: pools without L3; lane 16: positive control (L3 larvae; lanes 17: negative control (mosquito).
Sensitivity of the L3 specific RT-PCR assay in detecting the infective (L3) stage W. bancrofti in pools of Cx. quinquefasciatus mosquitoes
| Name of the centre | Number of positive pools | Number detected as positive (sensitivity %) | Number of negative pools | Number detected as negative (specificity %) |
|---|---|---|---|---|
| CRME, Madurai | 7 | 7 (100) | 9 | 9 (100) |
| ICMR-RMRC, Dibrugarh | 7 | 7 (100) | 9 | 9 (100) |
| ICMR-RMRC, Port Blair | 7 | 7 (100) | 9 | 9 (100) |
| ICMR-RMRC, Bhubaneswar | 7 | 7 (100) | 9 | 9 (100) |
| Overall | 28 | 28 (100) | 36 | 36 (100) |
Results of phase 2 evaluation of 50 samples by RT-PCR assay for detection of infective stage (L3) larvae of W. bancrofti in Cx. quinquefasciatus vectors
| Name of the centre | Number of positive pools | Number detected as positive (sensitivity %) | Number of negative pools | Number detected as negative (specificity %) | Concordant results (%) | κ statistic, K (95% CI) |
|---|---|---|---|---|---|---|
| CRME, Madurai | 25 | 21 (84) | 25 | 24 (96) | 45 (90) | 0.80 (0.63-0.97) |
| ICMR-RMRC, Dibrugarh | 25 | 23 (92) | 25 | 23 (92) | 46 (92) | 0.84 (0.69-0.99) |
| ICMR-RMRC, Port Blair | 25 | 10 (40) | 25 | 11 (44) | 21 (42) | 0.00 (0.00-0.11) |
| ICMR-RMRC, Bhubaneswar | 25 | 15 (60) | 25 | 15 (60) | 30 (60) | 0.00 (0.00-0.47) |
| Overall | 100 | 69 (69) | 100 | 73 (73) | 142 (71) | 0.42 (0.29-0.55) |
CI, confidence interval
Evaluation of the assay on wild caught Culex quinquefasciatus in comparison with dissection and microscopy
| Evaluating centre | Number of locations | Number of | Number of pools | Number of pools detected as positive (%) | Number of | Number positive for L3 | Infectivity rate (%, 95% CI) by | |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| PCR assay | Dissection | |||||||
| ICMR-RMRC, Dibrugarh | 10 | 2500 | 100 | 19 (19) | 938 | 13 | 0.84 (0.48-1.39) | 1.39 (0.64-2.13) |
| ICMR-RMRC, Bhubaneswar | 3 | 1000 | 40 | 2 (5) | 1550 | 29 | 0.20 (0.002-0.7) | 1.87 (1.2-2.5) |
| ICMR-RMRC, Port Blair | 2 | 1025 | 41 | 0 | 1000 | 0 | 0.0 | 0.0 |
| ICMR-CRME, Madurai* | - | - | - | - | - | - | - | - |
| Overall | 15 | 4525 | 181 | 21 | 3488 | 42 | 0.50 (0.32-0.82) | 1.20 (0.80-1.57) |
*Not completed
Comparison of RT PCR assay results with dissection method for L3 detection in vectors of LF in three locations of Odisha
| Study site | RT-PCR assay results | Dissection results | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. of pools | Total No. of mosquitoes | No. of pools positive for L3 | Infectivity rate (%) | LCL | UCL | No. of dissected | L1/L2 % | No. of positive for L3 | Infectivity rate % | LCL | UCL | |
| Cuttack | 20 | 500 | 1 | 0.20 | 0.006 | 1.05 | 578 | ND | 8 | 1.38 | 0.43 | 2.34 |
| Khurdha | 15 | 375 | 1 | 0.28 | 0.009 | 1.41 | 308 | ND | 7 | 2.27 | 0.61 | 3.94 |
| Nayagarh | 5 | 125 | 0 | 0.00 | 0.000 | 0.00 | 664 | ND | 14 | 2.11 | 1.02 | 3.20 |
| Total | 40 | 1000 | 2 | 0.20 | 0.002 | 0.71 | 1550 | ND | 29 | 1.87 | 1.20 | 2.55 |