| Literature DB >> 34781899 |
Sajad Shafiekhani1,2,3, Hojat Dehghanbanadaki3,4, Azam Sadat Fatemi1,2, Sara Rahbar1,2, Jamshid Hadjati5, Amir Homayoun Jafari6,7.
Abstract
BACKGROUND: Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal disease with rising incidence and with 5-years overall survival of less than 8%. PDAC creates an immune-suppressive tumor microenvironment to escape immune-mediated eradication. Regulatory T (Treg) cells and myeloid-derived suppressor cells (MDSC) are critical components of the immune-suppressive tumor microenvironment. Shifting from tumor escape or tolerance to elimination is the major challenge in the treatment of PDAC.Entities:
Keywords: 5-FU; Anti-CD25; Fuzzy; GUI; ODE
Mesh:
Substances:
Year: 2021 PMID: 34781899 PMCID: PMC8594222 DOI: 10.1186/s12885-021-08770-z
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Fig. 1Conceptual model of tumor-immune system interactions. The arrows depict activation/induction and blocked arrows indicate blocking/inhibiting
Summary of parameter values
| Parameter | Value | Definition | Units | References |
|---|---|---|---|---|
| 4.3992 × 10−2 | Panc02 tumor growth rate | Estimated | ||
| 1 × 1010 | Maximum sustainable tumor cell population | [ | ||
| 3.23 × 10−7 | NK-mediated tumor cell kill rate | [ | ||
| 1.1 × 10−7 | CTL-mediated tumor cell kill rate | [ | ||
| 2 × 10−34 | Proportional parameter of anti-CD25 treatment for inhibition of anti-immune effects of Treg on CTL-mediated tumor cell killing | Estimated | ||
| 0.345 | Rate of the suppressive effect of Treg on CTL-mediated tumor cell killing | [ | ||
| 0.286 | Rate of the suppressive effect of TGF-β on CTL-mediated tumor cell killing | [ | ||
| 3.5 × 10−2 | The apoptosis rate of Panc02 tumor cells by low-dose 5-FU treatment | Estimated | ||
| 2.5 × 105 | Proportional parameter of tumor inhibition rate by Treg depletion through anti-CD25 treatment | Estimated | ||
| 1 × 10−15 | Proportional parameter of tumor inhibition rate by Treg depletion through anti-CD25 treatment | Estimated | ||
| 100 | Depth of access of immune cells to the tumor mass | [ | ||
| 1.4 × 104 | Constant generation source of NK cells | [ | ||
| 4.12 × 10−2 | The exponential death rate of NK cells | [ | ||
| 0.125 | Maximum of IL-2-mediated NK cell growth | [ | ||
| 0.3 | Steepness coefficient of the IL-2-mediated NK cell growth rate | [ | ||
| 0.125 | Maximum of IFN-γ mediated NK cell growth rate | [ | ||
| 0.3 | The steepness coefficient of the IFN-γ-mediated NK cell growth rate | [ | ||
| 1 × 10−9 | Inactivation rate of NK cells by tumor cells | Estimated close to the value reported in [ | ||
| 1 × 10−10 | Suppression rate of NK cells by Tregs. | [ | ||
| 2 × 10−2 | The exponential death rate of CTLs | [ | ||
| 8 × 10−2 | Maximum tumor-mediated CTL recruitment rate | Estimated close to the value reported in [ | ||
| 2.02 × 1014 | Steepness coefficient of the tumor-mediated CTL recruitment curve | Estimated with regarding the value reported in [ | ||
| 1.1 × 10−7 | CTL stimulation rate by tumor-NK cells interactions | [ | ||
| 1.5 × 10−10 | Inactivation rate of CTLs by tumor cells | Estimated close to the value reported in [ | ||
| 125 × 10−5 | Maximum of IL-2-mediated CTL growth rate | Estimated with regarding the value reported in [ | ||
| 0.3 | The steepness coefficient of the IL-2-mediated CTL growth rate | [ | ||
| 12.5 × 10−2 | Maximum of IFN-γ-mediated CTL growth rate | [ | ||
| 0.3 | The steepness coefficient of the IFN-γ-mediated CTL growth rate | [ | ||
| 1 × 10−10 | Suppression rate of CTLs by Tregs | [ | ||
| 2.5 × 106 | The normal number of splenic MDSCs in C57/BL6 mice | [ | ||
| 18 × 10−2 | Minimal CTL proliferation factor induced by inhibition of MDSCs | [ | ||
| 6 × 10−3 | Parameter for MDSC-induced inhibition of CTL proliferation | [ | ||
| 1.25 × 106 | Normal MDSC production rate | [ | ||
| 3.25 × 10−2 | MDSCs normal death rate | Estimated with regarding the value reported in [ | ||
| 8 × 10−2 | MDSCs death rate during 5-FU treatment | Estimated with regarding the value reported in [ | ||
| 0.7 × 107 | MDSC expansion coefficient in Panc02 tumor-bearing mice | [ | ||
| 1 × 1010 | Steepness coefficient of the tumor-mediated MDSC production curve | [ | ||
| 3.6 × 105 | The production rate of T helper cells in the thymus | [ | ||
| 1.2 × 10−3 | The exponential death rate of T helper cells based on the half-life | [ | ||
| Maximum IL-2-mediated T helper cell proliferation rate | [ | |||
| 0.3 | Steepness coefficient of the IL-2-mediated T helper cell proliferation curve | [ | ||
| Maximum IFN-γ-mediated T helper cell proliferation rate | [ | |||
| 0.3 | Steepness coefficient of the IFN-γ-mediated T helper cell proliferation curve | [ | ||
| 1 × 10−10 | Suppression rate of T helper cells by Tregs | [ | ||
| 5.6 × 105 | The constant production rate of Tregs | [ | ||
| 2.3 × 10−2 | The exponential death rate of Tregs based on the half-life | [ | ||
| 2 × 10−4 | Treg origination rate from CTLs | [ | ||
| 4 × 10−4 | Treg origination rate from T helper cells | [ | ||
| 0.125 | Maximum IL-2-mediated growth rate of Tregs | [ | ||
| 0.3 | Steepness coefficient of the IL-2-mediated Treg growth curve | [ | ||
| 1 × 10−11 | NK-mediated Treg degradation constant rate | [ | ||
| 1.5 × 10−11 | Constant inhibition rate of Tregs by anti-CD25 treatment | [ | ||
| 2.2483 × 1011 | The natural death rate of IL-2 based on its half-life/ constant production rate of IL-2 by T helper cells | [ | ||
| 4.4691 × 10−13 | constant production rate of IFN-γ by CTLs/ Natural death rate of IFN-γ based on its half-life | [ | ||
| 4.4691 × 10−13 | The secretion rate of IFN-γ by NK cells/degradation rate of IFN-γ based on its half-life | [ | ||
| 4.4691 × 10−13 | The secretion rate of IFN-γ by T helper cells/degradation rate of IFN-γ based on its half-life | [ | ||
| 8.9382 × 10−13 | The constant production rate of TGF-β by tumor cells/death rate of TGF-β based on its half-life | [ |
Fig. 2Data fitting. The blue line shows predicted Panc02 tumor volume dynamics in no treatment case and blue stars are records of Panc02 tumor volume on days 5, 10, 15, 20, and 25 in the control group (Panc02 tumor inoculation is carried out on day 0 and normalized root mean square error (NRMSE = 0.1107) is used as a measure of goodness of fit). The purple dashed line shows predicted dynamics of Panc02 tumor volume and purple ‘>‘are data points gathered from experimental data in the 5-FU treatment group (5-FU therapy is carried out on days 1, 2, 3, and 4 after Panc02 tumor injection on day 0, and data record is carried out on days 5, 10, 15, 20 and 25, and NRMSE of 0.1085 is computed to assess model fitting). The black dotted line shows predicted dynamics of Panc02 tumor cells and black ‘circles’ are data points gathered from in vivo experiments in the anti-CD25 treatment group (anti-CD25 therapy is carried out on days 3, 6, 10, 13, 17, and 20 after tumor inoculation on day 0 and data record is carried out on days 7, 14, 21, 28 and 35, and NRMSE of 0.0928 is computed to assess model fitting)
Fig. 3Dynamics of all species in strategies: control, 5-FU, Anti-CD25, and combination therapy. The blue dashed lines show predicted dynamics of cells/cytokines in the control group, and the red lines show with 5-FU treatment (on days 1, 2, 3, and 4 after tumor inoculation), the yellow lines show with anti-CD25 therapy (on days 3, 6, 10, 13, 17 and 20 after tumor inoculation) and purple lines depict the dynamics of cells/cytokines under combination therapy. In each subplot (except for the second and third figures in the last panel), the y-axis represents the number/concentration of cell population/cytokine, and the x-axis represents the time in days after tumor inoculation. The initial population/concentration of tumor cells, NKs, CTLs, MDSCs, TCD4+, Treg, IL-2, IFN-γ, and TGF-β have all been set to 6 × 105, 105840, 21 × 104, 3 × 103, 564480, 42336, 2.5107 × 10−6, 3.9348 × 10−7, 5.363 × 10−7, respectively. The second and third figures in the fourth panel are parameters and terms related to 5-FU and anti-CD25 therapies, respectively
Fig. 4Comparison treatment efficacies and Analysis of interactions among treatments. The overall efficacy of 5-FU treatment, anti-CD25 treatment, and combination therapy was plotted as the percentage of tumor growth inhibition using instantaneous tumor size (first panel) and average tumor size (second panel) as outcomes. The blue line represents the inhibition percentage of tumor growth under 5-FU treatment on days 1, 2, 3, and 4 after tumor injection calculated based on the instantaneous tumor size during time and the red line under anti-CD25 treatment on days 3, 6, 10, 13, 17 and 20 after tumor inoculation and yellow line under combination therapy. (Third panel) The Bliss combination index (CI) for 5-FU and Anti-CD25treatments combination using instantaneous tumor size (CI inst) and average tumor size (CI ave) as an outcome. CI < 1 represents the synergistic effect of two treatments, CI = 1 additive, and CI > 1 antagonistic effect. The green dash-line indicates the threshold below which the 5-FU treatment and anti-CD25 treatment have a synergistic effect
Fig. 5Comparison treatment efficacies and Analysis of interactions among treatments. The overall efficacy of 5-FU treatment, anti-CD25 treatment, and combination therapy was plotted as the percentage of tumor growth inhibition using instantaneous tumor size (first panel of Fig. 5. A, B, C, and D) and average tumor size (second panel of Figs. 5. A, B, C, and D) as outcomes. The blue lines represent the inhibition percentage of tumor growth under 5-FU treatment on a specified time setting in each subplot that is calculated based on the instantaneous tumor size during time and the red lines under anti-CD25 treatment and yellow lines under combination therapy. (Third panel of Fig. 5. A, B, C, and D) The Bliss combination index (CI) for 5-FU and Anti-CD25 treatments combination using instantaneous tumor size (CI inst) and average tumor size (CI ave) as outcome shows the synergistic interaction of treatments
Fig. 6Dynamics of all cells/cytokines in strategies: control, 5-FU, Anti-CD25, and combination therapy with an optimized treatment schedule and comparison treatment efficacies and analysis of interactions among treatments. The blue lines in Fig. 6. B, D, and F show predicted dynamics of cells/cytokines in the control group, and the red lines show with 5-FU treatment (on specified time points), the yellow lines show with anti-CD25 therapy (on specified time points) and purple lines depict the dynamics under combinatorial manner. In each subplot in Fig. 6. B, D, and F (except for the second and third figures in the last panel), the y-axis represents the number/concentration of cell population/cytokine, and the x-axis represents the time in days after tumor inoculation. The initial condition is the same as those given in Fig. 3. The second and third figures in the fourth panels of fig. 6. B, D, and F show the terms related to 5-FU and anti-CD25 therapies, respectively. The overall efficacy of 5-FU treatment, anti-CD25 treatment, and combination therapy was plotted as the percentage of tumor growth inhibition using instantaneous tumor size (first panel of figs. 6. A, C, and E) and average tumor size (second panel of figs. 6. A, C and E) as outcomes. The blue line represents the inhibition percentage of tumor growth under 5-FU treatment on specified time points after tumor injection calculated based on the instantaneous tumor size during time and the red line under anti-CD25 treatment on specified time points after tumor inoculation and the yellow line under combination therapy. (Third panel of fig. 6. A, C and E) The Bliss combination index (CI) for 5-FU and Anti- treatments combination using instantaneous tumor size (CI inst) and average tumor size (CI ave) as an outcome
Fig. 7In silico assessment of treatments in the fuzzy setting. The membership function of the average of dynamics of cancer cells (panel A of figs. 7. A, B, C, and D), NK cells (panel B of figs. 7. A, B, C, and D), CTLs (panel C of figs. 7. A, B, C, and D), MDSCs (panel D of figs. 7. A, B, C, and D), T helper (panel E of figs. 7. A, B, C, and D), Treg (panel F of figs. 7. A, B, C, and D), cytokine IL-2 (panel G of figs. 7. A, B, C, and D), IFN-γ (panel H of figs. 7. A, B, C, and D), and TGF-β (panel K of figs. 7. A, B, C, and D) in the time interval from the start of therapies to day 150 for injection of 5-FU (on days 1, 2, 3, and 4) and anti-CD25 (on days 3, 6, 10, 13, 17 and 20) in fig. 7A, the different timing of 5-FU injection (fig. 7B), and for different timing of anti-CD25 injection (fig. 7C), and different timings of the combination of 5-FU and anti-CD25 (fig. 7D), in the fuzzy setting of kinetic parameter a1 = (0.9, 1, 1.1) × 4.3992 10
Fig. 8GSA analysis. Statistically significant PRCC values (p-value< 0.05) for tumor cells, NK cells, CTLs, MDSCs, T helper cells, Tregs, IL-2, IFN-γ, and TGF-β at days 20 (A. A), 50 (A. B) and 100 (A. C) after tumor injection. The mean of PRCC values for five replications of PRCC analysis was depicted in each pixel. Black pixels (‘NaN’) show ‘not a number’ and represent no significant correlation between outcome measures (population/concentration of cells/cytokines, elements in the vertical axis) and kinetic parameters of the model (elements in the horizontal axis). The standard deviation of significant PRCC values (p-value< 0.05) for five replications of PRCC analysis for tumor cells, NK cells, CTLs, MDSCs, T helper cells, Tregs, IL-2, IFN-γ and TGF-β at days 20 (B. A), 50 (B. B) and 100 (B. C) after tumor injection. The standard deviation of significant PRCC values for five replications of PRCC analysis was depicted in each pixel. P-values of PRCC analysis for tumor cells, NK cells, CTLs, MDSCs, T helper cells, Tregs, IL-2, IFN-γ, and TGF-β at days 20 (C. A), 50 (C. B), and 100 (C. C) after tumor injection. The maximum of p-values for five replications of PRCC analysis was depicted in each pixel. (D) The absolute mean value and standard deviation of the elementary effects test. Figures 8. D presents the relative importance of kinetic parameters of the TIS model, considering the population/concentration of cells/ cytokines at day 100 as the read-out, including the population of tumor cells (D. A), NK cells (D. B), CTLs (D. C), MDSCs (D. D), T helper cells (D. E), Tregs (D. F), IL-2 (D. G), IFN-γ (D. H) and TGF-β (D. K). Each kinetic parameter is specified by two Morris indices, μ *(horizontal axis) and σ (vertical axis), which describe the significance of the effects and the interaction effects, respectively
Fig. 9The Graphical user interface (GUI) of the model. The user-friendly GUI of TIS with regarding fuzzy/crisp kinetic parameters for in silico assessment of 5-FU and anti-CD25 therapies