Literature DB >> 34781197

Half a century later and we're back where we started: How the problem of locality turned in to the problem of portability.

Lucas J Matthews1.   

Abstract

In the 1970s, Lewontin sparked a debate about a problem of locality, by making the case that any given heritability estimate is local to the original population and environment studied, and could not be generalized to other populations and environments. Nearly 50 years later, a new problem of portability has emerged: the predictive accuracy of polygenic scores diminishes when applied to populations whose characteristics are different from the original population sample. This paper briefly reviews the nature of each problem and analyzes their similarities and differences in three areas: 1) conceptual underpinnings, 2) causal explanations, and 3) practical, social, and political implications. Although conceptually and methodologically different from the problem of locality in important respects, the problem of portability facing contemporary genomics today should come as no surprise, as it is an inevitable outcome of the kinds of problematic inferences detailed by Lewontin nearly half a century ago.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Behavioral genetics; Genome-wide association studies; Heritability; Locality; Polygenic scores; Portability

Mesh:

Year:  2021        PMID: 34781197      PMCID: PMC8837680          DOI: 10.1016/j.shpsa.2021.10.021

Source DB:  PubMed          Journal:  Stud Hist Philos Sci        ISSN: 0039-3681            Impact factor:   1.429


  27 in total

1.  Beware the chopsticks gene.

Authors:  D Hamer; L Sirota
Journal:  Mol Psychiatry       Date:  2000-01       Impact factor: 15.992

2.  The analysis of variance and the analysis of causes. 1974.

Authors:  R C Lewontin
Journal:  Int J Epidemiol       Date:  2006-04-27       Impact factor: 7.196

3.  Human Demographic History Impacts Genetic Risk Prediction across Diverse Populations.

Authors:  Alicia R Martin; Christopher R Gignoux; Raymond K Walters; Genevieve L Wojcik; Benjamin M Neale; Simon Gravel; Mark J Daly; Carlos D Bustamante; Eimear E Kenny
Journal:  Am J Hum Genet       Date:  2017-03-30       Impact factor: 11.025

4.  ASHG Denounces Attempts to Link Genetics and Racial Supremacy.

Authors: 
Journal:  Am J Hum Genet       Date:  2018-10-19       Impact factor: 11.025

5.  No Support for Historical Candidate Gene or Candidate Gene-by-Interaction Hypotheses for Major Depression Across Multiple Large Samples.

Authors:  Richard Border; Emma C Johnson; Luke M Evans; Andrew Smolen; Noah Berley; Patrick F Sullivan; Matthew C Keller
Journal:  Am J Psychiatry       Date:  2019-03-08       Impact factor: 18.112

6.  Large Cross-National Differences in Gene × Socioeconomic Status Interaction on Intelligence.

Authors:  Elliot M Tucker-Drob; Timothy C Bates
Journal:  Psychol Sci       Date:  2015-12-15

7.  Socioeconomic status modifies heritability of IQ in young children.

Authors:  Eric Turkheimer; Andreana Haley; Mary Waldron; Brian D'Onofrio; Irving I Gottesman
Journal:  Psychol Sci       Date:  2003-11

8.  Using Genetic Distance to Infer the Accuracy of Genomic Prediction.

Authors:  Marco Scutari; Ian Mackay; David Balding
Journal:  PLoS Genet       Date:  2016-09-02       Impact factor: 5.917

9.  Genetic associations with mathematics tracking and persistence in secondary school.

Authors:  K Paige Harden; Benjamin W Domingue; Daniel W Belsky; Jason D Boardman; Robert Crosnoe; Margherita Malanchini; Michel Nivard; Elliot M Tucker-Drob; Kathleen Mullan Harris
Journal:  NPJ Sci Learn       Date:  2020-02-05

10.  The Cyclical Return of the IQ Controversy: Revisiting the Lessons of the Resolution on Genetics, Race and Intelligence.

Authors:  Davide Serpico
Journal:  J Hist Biol       Date:  2021-05-21       Impact factor: 1.326

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  2 in total

1.  Three legs of the missing heritability problem.

Authors:  Lucas J Matthews; Eric Turkheimer
Journal:  Stud Hist Philos Sci       Date:  2022-05-06       Impact factor: 1.379

2.  Polygenic embryo testing: understated ethics, unclear utility.

Authors:  Josephine Johnston; Lucas J Matthews
Journal:  Nat Med       Date:  2022-03       Impact factor: 87.241

  2 in total

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