Literature DB >> 34766282

In Silico Design of Chemically Modified Cell-Penetrating Peptides.

Vinod Kumar1,2, Gajendra P S Raghava3.   

Abstract

In the past few decades, a large number of cell-penetrating peptides (CPPs) have been discovered. These CPPs have a wide range of applications including drug delivery vehicles. Numerous in silico tools have been developed over the years to design and predict the cell-penetrating peptides that contain natural amino acids. The majority of natural cell-penetrating peptides have several limitations including stability, immunogenicity as well as got entrapped in the cell's endosomes. The chemical modification is commonly used to most of these limitations. An in silico tool called CellPPDMod have been developed by our group to predict cell-penetration potential of chemically modified peptides. This chapter is dedicated for designing therapeutically important cell-penetrating peptides using CellPPDMod ( http://webs.iiitd.edu.in/raghava/cellppdmod/ ).
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Chemical modified cell-penetrating peptides; Drug delivery vehicles; Machine learning (prediction)

Mesh:

Substances:

Year:  2022        PMID: 34766282     DOI: 10.1007/978-1-0716-1752-6_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

1.  Cell-penetrating peptide and antibiotic combination therapy: a potential alternative to combat drug resistance in methicillin-resistant Staphylococcus aureus.

Authors:  Harmandeep Kaur Randhawa; Ankur Gautam; Minakshi Sharma; Rakesh Bhatia; Grish C Varshney; Gajendra Pal Singh Raghava; Hemraj Nandanwar
Journal:  Appl Microbiol Biotechnol       Date:  2016-02-02       Impact factor: 4.813

Review 2.  Cppsite 2.0: An Available Database of Experimentally Validated Cell-Penetrating Peptides Predicting their Secondary and Tertiary Structures.

Authors:  Kimia Kardani; Azam Bolhassani
Journal:  J Mol Biol       Date:  2020-11-10       Impact factor: 5.469

Review 3.  Recent Advances and Computational Approaches in Peptide Drug Discovery.

Authors:  Neha S Maurya; Sandeep Kushwaha; Ashutosh Mani
Journal:  Curr Pharm Des       Date:  2019       Impact factor: 3.116

4.  Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics.

Authors:  Sandeep Kumar Dhanda; Salman Sadullah Usmani; Piyush Agrawal; Gandharva Nagpal; Ankur Gautam; Gajendra P S Raghava
Journal:  Brief Bioinform       Date:  2017-05-01       Impact factor: 11.622

5.  Use of radiolabeled antibodies to carcinoembryonic antigen for the detection and localization of diverse cancers by external photoscanning.

Authors:  D M Goldenberg; F DeLand; E Kim; S Bennett; F J Primus; J R van Nagell; N Estes; P DeSimone; P Rayburn
Journal:  N Engl J Med       Date:  1978-06-22       Impact factor: 91.245

6.  Phase II trial of 131I-B1 (anti-CD20) antibody therapy with autologous stem cell transplantation for relapsed B cell lymphomas.

Authors:  O W Press; J F Eary; F R Appelbaum; P J Martin; W B Nelp; S Glenn; D R Fisher; B Porter; D C Matthews; T Gooley
Journal:  Lancet       Date:  1995-08-05       Impact factor: 79.321

7.  D-amino acids modulate the cellular response of enzymatic-instructed supramolecular nanofibers of small peptides.

Authors:  Junfeng Shi; Xuewen Du; Dan Yuan; Jie Zhou; Ning Zhou; Yibing Huang; Bing Xu
Journal:  Biomacromolecules       Date:  2014-09-17       Impact factor: 6.988

8.  PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues.

Authors:  Sandeep Singh; Harinder Singh; Abhishek Tuknait; Kumardeep Chaudhary; Balvinder Singh; S Kumaran; Gajendra P S Raghava
Journal:  Biol Direct       Date:  2015-12-21       Impact factor: 4.540

9.  Prediction of Cell-Penetrating Potential of Modified Peptides Containing Natural and Chemically Modified Residues.

Authors:  Vinod Kumar; Piyush Agrawal; Rajesh Kumar; Sherry Bhalla; Salman Sadullah Usmani; Grish C Varshney; Gajendra P S Raghava
Journal:  Front Microbiol       Date:  2018-04-12       Impact factor: 5.640

10.  SATPdb: a database of structurally annotated therapeutic peptides.

Authors:  Sandeep Singh; Kumardeep Chaudhary; Sandeep Kumar Dhanda; Sherry Bhalla; Salman Sadullah Usmani; Ankur Gautam; Abhishek Tuknait; Piyush Agrawal; Deepika Mathur; Gajendra P S Raghava
Journal:  Nucleic Acids Res       Date:  2015-11-02       Impact factor: 16.971

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