Literature DB >> 34759381

Functional genomics data: privacy risk assessment and technological mitigation.

Gamze Gürsoy1,2, Tianxiao Li1, Susanna Liu3,4, Eric Ni1, Charlotte M Brannon1,2,5, Mark B Gerstein6,7,8,9.   

Abstract

The generation of functional genomics data by next-generation sequencing has increased greatly in the past decade. Broad sharing of these data is essential for research advancement but poses notable privacy challenges, some of which are analogous to those that occur when sharing genetic variant data. However, there are also unique privacy challenges that arise from cryptic information leakage during the processing and summarization of functional genomics data from raw reads to derived quantities, such as gene expression values. Here, we review these challenges and present potential solutions for mitigating privacy risks while allowing broad data dissemination and analysis.
© 2021. Springer Nature Limited.

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Year:  2021        PMID: 34759381     DOI: 10.1038/s41576-021-00428-7

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  103 in total

Review 1.  Next generation sequencing in functional genomics.

Authors:  Thomas Werner
Journal:  Brief Bioinform       Date:  2010-05-25       Impact factor: 11.622

2.  High-resolution mapping and characterization of open chromatin across the genome.

Authors:  Alan P Boyle; Sean Davis; Hennady P Shulha; Paul Meltzer; Elliott H Margulies; Zhiping Weng; Terrence S Furey; Gregory E Crawford
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

Review 3.  Chromatin mechanisms regulating gene expression in health and disease.

Authors:  Constanze Bonifer; Peter N Cockerill
Journal:  Adv Exp Med Biol       Date:  2011       Impact factor: 2.622

Review 4.  Next generation sequencing based approaches to epigenomics.

Authors:  Martin Hirst; Marco A Marra
Journal:  Brief Funct Genomics       Date:  2010-12       Impact factor: 4.241

5.  Virulence of Bordetella bronchiseptica in the porcine respiratory tract.

Authors:  L A Collings; J M Rutter
Journal:  J Med Microbiol       Date:  1985-04       Impact factor: 2.472

6.  Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Authors:  Jason D Buenrostro; Paul G Giresi; Lisa C Zaba; Howard Y Chang; William J Greenleaf
Journal:  Nat Methods       Date:  2013-10-06       Impact factor: 28.547

Review 7.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

8.  Genome-wide mapping of in vivo protein-DNA interactions.

Authors:  David S Johnson; Ali Mortazavi; Richard M Myers; Barbara Wold
Journal:  Science       Date:  2007-05-31       Impact factor: 47.728

9.  The most common technologies and tools for functional genome analysis.

Authors:  Evelina Gasperskaja; Vaidutis Kučinskas
Journal:  Acta Med Litu       Date:  2017

Review 10.  Translating RNA sequencing into clinical diagnostics: opportunities and challenges.

Authors:  Sara A Byron; Kendall R Van Keuren-Jensen; David M Engelthaler; John D Carpten; David W Craig
Journal:  Nat Rev Genet       Date:  2016-03-21       Impact factor: 53.242

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  1 in total

1.  The molecular mechanism of Ligusticum wallichii for improving idiopathic pulmonary fibrosis: A network pharmacology and molecular docking study.

Authors:  Xiaozheng Wu; Wen Li; Zhenliang Luo; Yunzhi Chen
Journal:  Medicine (Baltimore)       Date:  2022-02-11       Impact factor: 1.817

  1 in total

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