Literature DB >> 34750024

The emerging role of open technologies for community-based improvement of cryopreservation and quality management for repository development in aquatic species.

Yue Liu1, W Todd Monroe2, Jorge A Belgodere2, Jin-Woo Choi3, M Teresa Gutierrez-Wing4, Terrence R Tiersch5.   

Abstract

Genetic resources of aquatic species are of tremendous value, but worldwide these are maintained almost exclusively as live populations. This is extremely expensive and insecure, and largely results from a pervasive lack of production capability, quality management, and reproducibility in cryopreservation that are barriers in development of germplasm repositories. Community-based technology approaches are emerging that can stimulate research previously limited by a lack of affordable, customizable equipment. Open-access technologies can provide for custom design and fabrication not available through traditional manufacturing. This can assist repository development with robust sample production methods and strong quality management, and can greatly improve reproducibility and standardization. Open technologies can support establishment of new communities of users, makers, and developers that collectively strive to develop open hardware in a distributed (i.e., non-centralized) fashion that can yield aggregate throughput. This occurs through use of consumer-level tools, supplies, software, and equipment, free exchange of designs and modifications, and a shared sense of mission. For cryopreservation and repository development, we have identified 14 categories of open hardware for a processing pathway, and six categories for a quality management pathway. Open hardware offers economic incentives to develop repositories for aquatic species, something that has not occurred despite 70 years of research largely focused on protocol development rather than practical applications. Advanced development of custom scientific hardware enhancing open technologies will be facilitated by interdisciplinary collaboration across biological and engineering fields. This manuscript is a contribution to the Special Issue in memory of Dr. Duane Garner, a leader in the sperm biology.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Communities; Cryopreservation; Hardware; Open technology; Repositories; Sperm

Year:  2021        PMID: 34750024      PMCID: PMC9012811          DOI: 10.1016/j.anireprosci.2021.106871

Source DB:  PubMed          Journal:  Anim Reprod Sci        ISSN: 0378-4320            Impact factor:   2.220


  42 in total

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Authors:  Sayyed Mohammad Hadi Alavi; Jacky Cosson
Journal:  Cell Biol Int       Date:  2005-11-08       Impact factor: 3.612

2.  A new open-source hardware device to measure vertical sperm motility and concentration.

Authors:  Cindy Rivas Arzaluz; María E Ayala; Andrés Aragón Martínez
Journal:  Cytometry A       Date:  2021-03-31       Impact factor: 4.355

3.  The effect of extenders, cryoprotectants and cryopreservation methods on common carp (Cyprinus carpio) sperm.

Authors:  Henky Irawan; Verapong Vuthiphandchai; Subuntith Nimrat
Journal:  Anim Reprod Sci       Date:  2010-08-26       Impact factor: 2.145

4.  A Planar Microfluidic Mixer Based on Logarithmic Spirals.

Authors:  Thomas Scherr; Christian Quitadamo; Preston Tesvich; Daniel Sang-Won Park; Terrence Tiersch; Daniel Hayes; Jin-Woo Choi; Krishnaswamy Nandakumar; W Todd Monroe
Journal:  J Micromech Microeng       Date:  2012       Impact factor: 1.881

5.  On-Site Capabilities of a Mobile Laboratory for Aquatic Germplasm Cryopreservation.

Authors:  William M Childress; Brian Bosworth; Edward Chesney; Ronald B Walter; Terrence R Tiersch
Journal:  N Am J Aquac       Date:  2019-05-20       Impact factor: 1.717

6.  Biophysics of zebrafish (Danio rerio) sperm.

Authors:  M Hagedorn; J Ricker; M McCarthy; S A Meyers; T R Tiersch; Z M Varga; F W Kleinhans
Journal:  Cryobiology       Date:  2008-10-10       Impact factor: 2.487

7.  Open Labware: 3-D printing your own lab equipment.

Authors:  Tom Baden; Andre Maia Chagas; Gregory J Gage; Greg Gage; Timothy C Marzullo; Timothy Marzullo; Lucia L Prieto-Godino; Thomas Euler
Journal:  PLoS Biol       Date:  2015-03-20       Impact factor: 8.029

Review 8.  3D-printing techniques in a medical setting: a systematic literature review.

Authors:  Philip Tack; Jan Victor; Paul Gemmel; Lieven Annemans
Journal:  Biomed Eng Online       Date:  2016-10-21       Impact factor: 2.819

9.  GenBank.

Authors:  Dennis A Benson; Mark Cavanaugh; Karen Clark; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

Review 10.  Printed Circuit Board (PCB) Technology for Electrochemical Sensors and Sensing Platforms.

Authors:  Hamed Shamkhalichenar; Collin J Bueche; Jin-Woo Choi
Journal:  Biosensors (Basel)       Date:  2020-10-30
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  4 in total

1.  The Need for a Framework Addressing the Temporal Aspects of Fish Sperm Motility Leading to Community-Level Standardization.

Authors:  Harvey Blackburn; Leticia Torres; Yue Liu; Terrence R Tiersch
Journal:  Zebrafish       Date:  2022-08       Impact factor: 2.229

2.  A 3-D printed vitrification device integrated with French straws.

Authors:  Nolan J Tiersch; Jacqueline Paulsen; Yue Liu; Terrence R Tiersch
Journal:  HardwareX       Date:  2022-10-04

3.  An Open-Hardware Insemination Device for Small-Bodied Live-Bearing Fishes to Support Development and Use of Germplasm Repositories.

Authors:  Elise R Harmon; Yue Liu; Hamed Shamkhalichenar; Valentino Browning; Markita Savage; Terrence R Tiersch; William Todd Monroe
Journal:  Animals (Basel)       Date:  2022-04-08       Impact factor: 3.231

4.  Cryopreservation of Hydractinia symbiolongicarpus Sperm to Support Community-Based Repository Development for Preservation of Genetic Resources.

Authors:  Aidan L Huene; Jack C Koch; Lucía Arregui; Yue Liu; Matthew L Nicotra; Virginia M Weis; Terrence R Tiersch
Journal:  Animals (Basel)       Date:  2022-09-22       Impact factor: 3.231

  4 in total

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