Literature DB >> 34747494

Correction to 'Genomic impact of stress-induced transposable element mobility in Arabidopsis'.

David Roquis1, Marta Robertson1, Liang Yu2, Michael Thieme3, Magdalena Julkowska2, Etienne Bucher1.   

Abstract

Entities:  

Year:  2021        PMID: 34747494      PMCID: PMC8599832          DOI: 10.1093/nar/gkab1078

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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The authors wish to correct two citations and add a missing reference (78) as follows (shown in bold):

RESULTS

ONSEN preferentially integrates into coding exons enriched for the H3K27me3 histone mark and H2A.Z histone variant … We compared our set of novel ONSEN insertions with those previously described in wild plants (natural insertions, Figure 2) and in NRPD1 defective plants (nrpd1 insertions, Figure 2) (44,78) … … We used our novel hcLines insertions (n= 237) as well as the previously identified nrpd1 (n= 281) and natural (n= 279) insertions (44,78) … Figure 2 caption Genome-wide distribution of novel ONSEN insertions in the Arabidopsis genome. Novel insertions detected in this study are represented in blue (hcLines) and those previously reported (44,78) for natural populations and nrpd1 plants in grey and orange, respectively. The density plots below the grey chromosome schemes show gene density (green) and TE density (yellow). Units are given in Mb.

DISCUSSION

… Here we found that ONSEN had a clear preference for chromatin states rich in H2A.Z (as also documented by (78)) and H3K27me3 … … It is notable that ONSEN preferentially integrated in genes with the chromatin states 5 and 2 that show a low expression level in adult plants and are often associated with typical polycomb chromatin or repressed regions ((78) and this work) … … As the insertion sites observed in the hcLines are similar to the ones previously documented for nrpd1 and natural populations (44,78), both in terms of chromatin states and genomic features, we concluded that the activation through the exposition to α-amanitin and zebularine did not impact ONSEN insertion site preferences … … These genes and functions have recently been highlighted to play a role in response to abiotic stress in plants (70,71) and it goes in the same direction as a previous observation stating that ONSEN preferentially targets environmentally responsive genes (78) … The article (1) has been updated. The correction does not affect the results, discussion and conclusions presented in the article.
  5 in total

Review 1.  The role of NAD biosynthesis in plant development and stress responses.

Authors:  Shin-nosuke Hashida; Hideyuki Takahashi; Hirofumi Uchimiya
Journal:  Ann Bot       Date:  2009-02-05       Impact factor: 4.357

2.  The Arabidopsis thaliana mobilome and its impact at the species level.

Authors:  Leandro Quadrana; Amanda Bortolini Silveira; George F Mayhew; Chantal LeBlanc; Robert A Martienssen; Jeffrey A Jeddeloh; Vincent Colot
Journal:  Elife       Date:  2016-06-03       Impact factor: 8.140

3.  Transposition favors the generation of large effect mutations that may facilitate rapid adaption.

Authors:  Leandro Quadrana; Mathilde Etcheverry; Arthur Gilly; Erwann Caillieux; Mohammed-Amin Madoui; Julie Guy; Amanda Bortolini Silveira; Stefan Engelen; Victoire Baillet; Patrick Wincker; Jean-Marc Aury; Vincent Colot
Journal:  Nat Commun       Date:  2019-07-31       Impact factor: 14.919

Review 4.  The Function of Inositol Phosphatases in Plant Tolerance to Abiotic Stress.

Authors:  Qi Jia; Defeng Kong; Qinghua Li; Song Sun; Junliang Song; Yebao Zhu; Kangjing Liang; Qingming Ke; Wenxiong Lin; Jinwen Huang
Journal:  Int J Mol Sci       Date:  2019-08-16       Impact factor: 5.923

5.  Genomic impact of stress-induced transposable element mobility in Arabidopsis.

Authors:  David Roquis; Marta Robertson; Liang Yu; Michael Thieme; Magdalena Julkowska; Etienne Bucher
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

  5 in total

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