Literature DB >> 3474644

Formation of the triple-stranded polynucleotide helix, poly(A.A.U).

S L Broitman, D D Im, J R Fresco.   

Abstract

A polynucleotide helical structure containing two strands of poly(A) and one of poly(U) is reported. As shown by spectroscopic observations, the complex only forms when the poly(A) strands are of Mr between 9000 and 50,000 (degree of polymerization congruent to 28-150), whereas the size of the poly(U) strand has no effect. This limitation may explain why poly(A.A.U) was not seen in previous investigations. The potential of the poly(A) tails of mRNA for formation of this triple helix and of A.A.U or/and A.A.T triplet formation to contribute to the binding of specific RNA strands to gene-encoding nucleic acid double helices are noted.

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Year:  1987        PMID: 3474644      PMCID: PMC298805          DOI: 10.1073/pnas.84.15.5120

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

Review 1.  Structural and energetic consequences of noncomplementary base oppositions in nucleic acid helices.

Authors:  A J Lomant; J R Fresco
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1975

2.  NUCLEIC ACIDS: A NUCLEAR MAGNETIC RESONANCE STUDY.

Authors:  C C MCDONALD; W D PHILLIPS; S PENMAN
Journal:  Science       Date:  1964-06-05       Impact factor: 47.728

3.  Helical arrangements in synthetic and natural polynucleotides.

Authors:  J R FRESCO
Journal:  Trans N Y Acad Sci       Date:  1959-06

4.  Theoretical studies on the interaction of synthetic polyribonucleotides.

Authors:  G FELSENFELD
Journal:  Biochim Biophys Acta       Date:  1958-07

5.  Studies on polynucleotides synthesized by polynucleotide phosphorylase. II. Structure of polymers containing a mixture of bases.

Authors:  L A HEPPEL; P J ORTIZ; S OCHOA
Journal:  J Biol Chem       Date:  1957-12       Impact factor: 5.157

6.  Infrared study of helix strandedness in the poly A-poly U system.

Authors:  H T Miles; J Frazier
Journal:  Biochem Biophys Res Commun       Date:  1964       Impact factor: 3.575

7.  Nuclear RNA is spliced in the absence of poly(A) addition.

Authors:  M Zeevi; J R Nevins; J E Darnell
Journal:  Cell       Date:  1981-10       Impact factor: 41.582

8.  Polynucleotides. 8. A spectral approach to the equilibria between polyriboadenylate and polyribouridylate and their complexes.

Authors:  R D Blake; J Massoulié; J R Fresco
Journal:  J Mol Biol       Date:  1967-12-14       Impact factor: 5.469

9.  Physical and chemical characterization of two- and three-stranded adenine-thymine and adenine-uracil homopolymer complexes.

Authors:  M Riley; B Maling
Journal:  J Mol Biol       Date:  1966-09       Impact factor: 5.469

10.  Polynucleotides. VII. Spectrophotometric study of the kinetics of formation of the two-stranded helical complex resulting from the interaction of polyriboadenylate and polyribouridylate.

Authors:  R D Blake; J R Fresco
Journal:  J Mol Biol       Date:  1966-08       Impact factor: 5.469

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  31 in total

1.  Binding of oligonucleotides to a viral hairpin forming RNA triplexes with parallel G*G*C triplets.

Authors:  Pedro Carmona; Marina Molina
Journal:  Nucleic Acids Res       Date:  2002-03-15       Impact factor: 16.971

2.  Mg2+-induced triplex formation of an equimolar mixture of poly(rA) and poly(rU).

Authors:  Besik I Kankia
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

3.  A comprehensive classification of nucleic acid structural families based on strand direction and base pairing.

Authors:  R Lavery; K Zakrzewska; J S Sun; S C Harvey
Journal:  Nucleic Acids Res       Date:  1992-10-11       Impact factor: 16.971

4.  The vacuum UV CD spectra of G.G.C triplexes.

Authors:  K H Johnson; R H Durland; M E Hogan
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

5.  Thermodynamic characterization of the stability and the melting behavior of a DNA triplex: a spectroscopic and calorimetric study.

Authors:  G E Plum; Y W Park; S F Singleton; P B Dervan; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1990-12       Impact factor: 11.205

6.  Photofootprinting of DNA triplexes.

Authors:  V I Lyamichev; O N Voloshin; M D Frank-Kamenetskii; V N Soyfer
Journal:  Nucleic Acids Res       Date:  1991-04-11       Impact factor: 16.971

7.  Recognition of Single-Stranded Nucleic Acids by Triplex Formation: The Binding of Pyrimidine-Rich Sequences.

Authors:  Shaohui Wang; Eric T Kool
Journal:  J Am Chem Soc       Date:  1994-09       Impact factor: 15.419

8.  Elucidation of the sequence-specific third-strand recognition of four Watson-Crick base pairs in a pyrimidine triple-helix motif: T.AT, C.GC, T.CG, and G.TA.

Authors:  K Yoon; C A Hobbs; J Koch; M Sardaro; R Kutny; A L Weis
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

9.  Detection and kinetic studies of triplex formation by oligodeoxynucleotides using real-time biomolecular interaction analysis (BIA).

Authors:  P J Bates; H S Dosanjh; S Kumar; T C Jenkins; C A Laughton; S Neidle
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

10.  Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA.

Authors:  Y Kohwi; T Kohwi-Shigematsu
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

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