| Literature DB >> 34744476 |
Alexey P Seregin1, Yurii M Basov2.
Abstract
BACKGROUND: Global Biodiversity Information Facility (GBIF) has uneven data coverage across taxonomic, spatial and temporal dimensions. Temporal imbalances in the data coverage are particularly dramatic. Thus, 188.3M GBIF records were made in 2020, more than the whole lot of the currently available pre-1986 electronic data. This underscores the importance of reliable and precise biodiversity spatial data collected in early times. Biological collections certainly play a key role in our knowledge of biodiversity in the past. However, digitisation of historical literature is underway, being a modern trend in biodiversity data mining. The grid dataset for the flora of Vladimir Oblast, Russia, includes many historical records borrowed from the "Flora des Gouvernements Wladimir" by Alexander F. Fleroff (also known as Flerov or Flerow). Intensive study of Fleroff's collections and field surveys exactly in the same localities where he worked, showed that the quality of his data is superb. Species lists collected across hundreds of localities form a unique source of reliable information on the floristic diversity of Vladimir Oblast and adjacent areas for the period from 1894 to 1901. Since the grid dataset holds generalised data, we made precise georeferencing of Fleroff's literature records and published them in the form of a GBIF-mediated dataset. NEW INFORMATION: A dataset, based on "Flora des Gouvernements Wladimir. I. Pflanzengeographische Beschreibung des Gouvernements Wladimir" by Fleroff (1902), includes 8,889 records of 654 taxa (mainly species) from 366 localities. The majority of records originate from Vladimir Oblast (4,611 records of 534 taxa from 195 localities) and Yaroslavl Oblast (2,013 records of 409 taxa from 66 localities), but also from Nizhny Novgorod Oblast (942 records), Ivanovo Oblast (667 records) and Moscow Oblast (656 records). The leading second-level administrative units by the number of records are Pereslavsky District (2,013 records), Aleksandrovsky District (1,318 records) and Sergievo-Posadsky District (599 records). Georeferencing was carried out, based on the expert knowledge of the area, analysis of modern satellite images and old topographic maps. For 2,460 records, the georeferencing accuracy is 1,000 m or less (28%), whereas for 6,070 records it is 2,000 m or less (68%). The mean accuracy of records of the entire dataset is 2,447 m. That accuracy is unattainable for most herbarium collections of the late 19th century. Some localities of rare plants discovered by Fleroff and included into the dataset were completely lost in the 20th century due to either peat mining or development of urban areas. Alexey P. Seregin, Yurii M. Basov.Entities:
Year: 2021 PMID: 34744476 PMCID: PMC8551138 DOI: 10.3897/BDJ.9.e75299
Source DB: PubMed Journal: Biodivers Data J ISSN: 1314-2828
Figure 1.Distribution of GBIF-mediated records from 1800 to 2021 by years showing the disproportion in temporal data coverage across GBIF (source: https://www.gbif.org/, as of 05 September 2021).
Figure 2.Alexander F. Fleroff while working in Vladimir Governorate.
Figure 3.Title page of the original source by Fleroff (1902), a monograph published in Moscow within the "Schriften herausgegeben von der Naturforscher-Gesellschaft bei der Universität Jurieff" series.
Figure 4a.title page of "Flora des Gouvernements Wladimir. I. Pflanzengeographische Beschreibung des Gouvernements Wladimir" (in Russian, with enlarged German abstract), the first part.
Figure 4b.title page of "Flora Gubernii Wladimiriensis. II. Enumeratio plantarum" (in Latin), the second part.
Figure 10a.Spatial distribution of centroids.
Figure 10b.Spatial distribution of weighted data (circles show the number of records per centroid).
General overview of digitised data from Fleroff (1902) against modern first-level administrative units (oblasts) of the Russian Federation.
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| Vladimir Oblast | 195 | 534 | 4,611 |
| Yaroslavl Oblast | 66 | 409 | 2,013 |
| Nizhny Novgorod Oblast | 37 | 307 | 942 |
| Ivanovo Oblast | 36 | 273 | 667 |
| Moscow Oblast | 32 | 203 | 656 |
| Total | 367 | 654 | 8,889 |
General overview of digitised data from Fleroff (1902) against modern second-level administrative/municipal units (districts and cities) of the Russian Federation.
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| Pereslavsky District | Yaroslavl Oblast | 66 | 409 | 2,013 |
| Aleksandrovsky District | Vladimir Oblast | 40 | 317 | 1,318 |
| Sergievo-Posadsky District | Moscow Oblast | 29 | 199 | 599 |
| Yuryev-Polsky District | Vladimir Oblast | 14 | 257 | 586 |
| Vachsky District | Nizhny Novgorod Oblast | 13 | 249 | 523 |
| Suzdalsky District | Vladimir Oblast | 28 | 200 | 482 |
| Vyaznikovsky District | Vladimir Oblast | 26 | 187 | 399 |
| Gorokhovetsky District | Vladimir Oblast | 14 | 190 | 375 |
| Gavrilovo-Posadsky District | Ivanovo Oblast | 11 | 202 | 368 |
| Navashinsky District | Nizhny Novgorod Oblast | 16 | 144 | 283 |
| Kovrovsky District | Vladimir Oblast | 11 | 134 | 258 |
| Kirzhachsky District | Vladimir Oblast | 13 | 132 | 258 |
| Yuzhsky District | Ivanovo Oblast | 18 | 137 | 244 |
| City of Kovrov | Vladimir Oblast | 5 | 113 | 193 |
| Kameshkovsky District | Vladimir Oblast | 6 | 102 | 139 |
| Sudogodsky District | Vladimir Oblast | 6 | 76 | 123 |
| Muromsky District | Vladimir Oblast | 7 | 83 | 108 |
| Melenkovsky District | Vladimir Oblast | 4 | 76 | 94 |
| Petushinsky District | Vladimir Oblast | 8 | 63 | 85 |
| City of Vladimir | Vladimir Oblast | 4 | 55 | 65 |
| Volodarsky District | Nizhny Novgorod Oblast | 2 | 57 | 64 |
| Teykovsky District | Ivanovo Oblast | 7 | 41 | 55 |
| Pavlovsky District | Nizhny Novgorod Oblast | 5 | 44 | 53 |
| City of Murom | Vladimir Oblast | 1 | 40 | 45 |
| Town of Aleksandrov | Vladimir Oblast | 1 | 37 | 42 |
| Orekhovo-Zuyevsky District | Moscow Oblast | 2 | 30 | 39 |
| Selivanovsky District | Vladimir Oblast | 3 | 22 | 24 |
| Kulebaksky District | Nizhny Novgorod Oblast | 1 | 17 | 19 |
| Taldomsky District | Moscow Oblast | 1 | 15 | 18 |
| Town of Suzdal | Vladimir Oblast | 1 | 7 | 7 |
| Sobinsky District | Vladimir Oblast | 1 | 1 | 1 |
| Town of Vyazniki | Vladimir Oblast | 1 | 1 | 1 |
| Kolchuginsky District | Vladimir Oblast | 1 | 1 | 1 |
| Rank | Scientific Name | |
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| phylum |
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| phylum |
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| phylum |
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| phylum |
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| phylum |
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| phylum |
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| Column label | Column description |
|---|---|
| occurrenceID | An identifier for the Occurrence (as opposed to a particular digital record of the occurrence). A variable constructed from a combination of two identifiers in the record that will most closely make the occurrenceID globally unique (datasetID + ID of a record within the dataset). For example, "'urn:lsid:biocol.org:col:15550:11:5030". |
| dcterms:type | The nature or genre of the resource. A constant ("Dataset"). |
| dcterms:modified | The most recent date-time on which the resource was changed. A constant ("2021-09-04"). |
| dcterms:language | A language of the resource. A constant ("en | ru", i.e. English and Russian) |
| dcterms:license | A legal document giving official permission to do something with the resource. A constant (" |
| dcterms:rightsHolder | A person or organisation owning or managing rights over the resource. A constant ("Moscow State University"). |
| dcterms:accessRights | Information about who can access the resource or an indication of its security status. A constant ("Use under CC BY 4.0"). |
| institutionID | An identifier for the institution having custody of the object(s) or information referred to in the record. A constant (" |
| collectionID | An identifier for the collection or dataset from which the record was derived. A constant ("urn:lsid:biocol.org:col:15550" for the Moscow University Herbarium). |
| datasetID | An identifier for the set of data. May be a global unique identifier or an identifier specific to a collection or institution. A constant ("urn:lsid:biocol.org:col:15550:11"). |
| institutionCode | The name (or acronym) in use by the institution having custody of the object(s) or information referred to in the record. A constant ("Moscow State University"). |
| datasetName | The name identifying the dataset from which the record was derived. A constant ("Flora des Gouvernements Wladimir" (Fleroff, 1902): georeferenced records). |
| ownerInstitutionCode | The name (or acronym) in use by the institution having ownership of the object(s) or information referred to in the record. A constant ("Moscow State University"). |
| basisOfRecord | The specific nature of the data record - a subtype of the dcterms:type. A constant ("HumanObservation"). |
| catalogNumber | An identifier (preferably unique) for the record within the dataset or collection. A variable. For example, "Flerov:5030". |
| recordedBy | A list (concatenated and separated) of names of people, groups or organisations responsible for recording the original occurrence. A variable. For example, "Alexander F. Fleroff". |
| occurrenceStatus | A statement about the presence or absence of a taxon at a location. A constant ("present"). |
| associatedReferences | A list (concatenated and separated) of identifiers (publication, bibliographic reference, global unique identifier, URI) of literature associated with the Occurrence. A variable with a page reference. For example, "Fleroff (1902), p. 182 [Fleroff A. (1902). Flora des Gouvernements Wladimir. I. Pflanzengeographische Beschreibung des Gouvernements Wladimir. Moskva. 338 p.]". |
| eventDate | The date or interval during which an event occurred. For occurrences, this is the date when the event was recorded. A constant ("1894/1901"). |
| higherGeography | A list (concatenated and separated) of geographic names less specific than the information captured in the locality term. A variable. For example, "Europe | Russian Federation | Vladimir Oblast | Petushinskii raion". |
| continent | The name of the continent in which the location occurs. A constant ("Europe"). |
| country | The name of the country or major administrative unit in which the location occurs. A constant ("Russian Federation"). |
| countryCode | The standard code for the country in which the location occurs. A constant ("RU"). |
| stateProvince | The name of the next smaller administrative region than country (state, province, canton, department, region etc.) in which the location occurs. A variable. For example, "Vladimir Oblast". |
| county | The full, unabbreviated name of the next smaller administrative region than stateProvince (county, shire, department, etc.) in which the Location occurs. A variable. For example, "Petushinskii raion". |
| verbatimLocality | The original textual description of the place. A variable. For example, "озеро Верхнее по р. Ушма, берега". |
| locationRemarks | Comments or notes about the Location. A constant ("original description in Russian by Fleroff (1902)") |
| decimalLatitude | The geographic latitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a location. A variable. |
| decimalLongitude | The geographic longitude (in decimal degrees, using the spatial reference system given in geodeticDatum) of the geographic centre of a location. A variable. |
| geodeticDatum | The ellipsoid, geodetic datum or spatial reference system (SRS) upon which the geographic coordinates given in decimalLatitude and decimalLongitude are based. A constant ("WGS84"). |
| coordinateUncertaintyInMeters | The horizontal distance (in metres) from the given decimalLatitude and decimalLongitude describing the smallest circle containing the whole of the location. A variable. |
| coordinatePrecision | A decimal representation of the precision of the coordinates given in the decimalLatitude and decimalLongitude. A constant ("0.0001"). |
| georeferencedBy | A list (concatenated and separated) of names of people, groups or organisations who determined the georeference (spatial representation) of the location. A constant ("Alexey P. Seregin"). |
| georeferencedDate | The date on which the Location was georeferenced. A constant ("2021-08"). |
| georeferenceSources | A list (concatenated and separated) of maps, gazetteers or other resources used to georeference the Location, described specifically enough to allow anyone in the future to use the same resources. A constant (" |
| georeferenceRemarks | Notes or comments about the spatial description determination, explaining assumptions made in addition or opposition to the those formalised in the method. A variable. For example, "centroid position: у Бельских двориков". |
| identifiedBy | A list (concatenated and separated) of names of people, groups or organisations who assigned the Taxon to the subject. A constant ("Alexander F. Fleroff"). |
| dateIdentified | The date on which the subject was identified as representing the Taxon. A constant ("1894/1901"). |
| taxonID | An identifier for the set of taxon information (data associated with the Taxon class). May be a global unique identifier or an identifier specific to the dataset. A variable. For example, "VLA0034" as a reference for |
| nameAccordingToID | An identifier for the source in which the specific taxon concept circumscription is defined or implied. See nameAccordingTo. A variable. For example, doi: 10.15468/7zk2y5. |
| scientificName | The full scientific name, with authorship and date information, if known. A variable (for example, "Scirpus sylvaticus L."). |
| nameAccordingTo | For taxa that result from identifications, a reference to the keys, monographs, experts and other sources should be given. A variable. Two options: (1) "Seregin A (2021). Flora of Vladimir Oblast (Seregin, 2014): accepted names. Lomonosov Moscow State University. Checklist dataset |
| phylum | The full scientific name of the phylum or division in which the taxon is classified. A variable. For example, " |
| taxonRank | The taxonomic rank of the most specific name in the scientificName. A variable. (four options: "species", "variety", "genus", "speciesAggregate"). |
| vernacularName | A common or vernacular name. A variable. For example, "сфагны". |
| nomenclaturalCode | The nomenclatural code (or codes in the case of an ambiregnal name) under which the scientificName is constructed. A constant ("International Code of Nomenclature for algae, fungi and plants"). |
| taxonomicStatus | The status of the use of the scientificName as a label for a taxon. A constant ("accepted"). |
| taxonRemarks | Comments or notes about the taxon or name. A variable. For example, "тростник in Fleroff (1902)". |