Literature DB >> 34742401

Achieving a realistic native protein ensemble by HDX-MS and computational modeling.

Elizabeth A Komives1.   

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Year:  2021        PMID： 34742401      PMCID： PMC8715172          DOI： 10.1016/j.bpj.2021.10.041

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  13 in total

1.  Explicit-chain model of native-state hydrogen exchange: implications for event ordering and cooperativity in protein folding.

Authors:  Hüseyin Kaya; Hue Sun Chan
Journal:  Proteins       Date:  2005-01-01

2.  Identification of slow molecular order parameters for Markov model construction.

Authors:  Guillermo Pérez-Hernández; Fabian Paul; Toni Giorgino; Gianni De Fabritiis; Frank Noé
Journal:  J Chem Phys       Date:  2013-07-07       Impact factor: 3.488

3.  Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors.

Authors:  V J Hilser; E Freire
Journal:  J Mol Biol       Date:  1996-10-11       Impact factor: 5.469

4.  A statistical mechanical model for hydrogen exchange in globular proteins.

Authors:  D W Miller; K A Dill
Journal:  Protein Sci       Date:  1995-09       Impact factor: 6.725

5.  Prediction of native-state hydrogen exchange from perfectly funneled energy landscapes.

Authors:  Patricio O Craig; Joachim Lätzer; Patrick Weinkam; Ryan M B Hoffman; Diego U Ferreiro; Elizabeth A Komives; Peter G Wolynes
Journal:  J Am Chem Soc       Date:  2011-10-06       Impact factor: 15.419

6.  Determinants of protein hydrogen exchange studied in equine cytochrome c.

Authors:  J S Milne; L Mayne; H Roder; A J Wand; S W Englander
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

7.  Prediction of local structural stabilities of proteins from their amino acid sequences.

Authors:  Gian Gaetano Tartaglia; Andrea Cavalli; Michele Vendruscolo
Journal:  Structure       Date:  2007-02       Impact factor: 5.006

8.  Modeling the native ensemble of PhuS using enhanced sampling MD and HDX-ensemble reweighting.

Authors:  Kyle C Kihn; Tyree Wilson; Ally K Smith; Richard T Bradshaw; Patrick L Wintrode; Lucy R Forrest; Angela Wilks; Daniel J Deredge
Journal:  Biophys J       Date:  2021-11-10       Impact factor: 4.033

9.  Determination of amide hydrogen exchange by mass spectrometry: a new tool for protein structure elucidation.

Authors:  Z Zhang; D L Smith
Journal:  Protein Sci       Date:  1993-04       Impact factor: 6.725

10.  Interpretation of HDX Data by Maximum-Entropy Reweighting of Simulated Structural Ensembles.

Authors:  Richard T Bradshaw; Fabrizio Marinelli; José D Faraldo-Gómez; Lucy R Forrest
Journal:  Biophys J       Date:  2020-02-15       Impact factor: 4.033
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