| Literature DB >> 34741101 |
Wen Sun1,2,3,4, Ke Yang5,6,7,8, Risheng Li5,6,7,8, Tianqing Chen5,6,7,8, Longfei Xia5,6,7,8, Zhao Wang5,6,7,8, Xubo Sun5,6,7,8.
Abstract
Using samples collected in Shahe Reservoir in the upper North Canal in China, this research analyzes the structure of a microorganism group in sediment and the absolute abundance of two typical pathogenic bacteria (Escherichia coli and Enterococcus), and their relationship with environmental factors including total nitrogen (TN) and total phosphorus (TP). The study of samples collected from the surface (0-20 cm) and sediment cores shows that the absolute abundance of E. coli in horizontal distribution in the sediment is highest in downstream of the reservoir and point source pollution area. In vertical distribution, the absolute gene expression level of the two pathogenic bacteria in the sediment tends to decrease with increasing depth, although its highest value at 10-30 cm depth. The relative abundance the two pathogenic bacteria is much greater in the sediment of Shahe Reservoir with the structure of horizontal groups including Clortridium sensu stricto, unclassified Anaeroineaceae, and Povalibacter, while Anaeroineaceae is much more abundant in the group structure of the vertical distribution. Pearson correlation analysis suggests positive correlation in horizontal distribution for E. coli and TN and TP (P < 0.05) and for Enterococcus and TP (P < 0.05). The results clearly show that the amount of pathogenic bacteria in the sediment in Shahe Reservoir is most likely due to water eutrophication.Entities:
Year: 2021 PMID: 34741101 PMCID: PMC8571322 DOI: 10.1038/s41598-021-01252-z
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Arrangement and zoning map of sediment and interstitial water sampling points at Shahe Reservoir. (The figure was created by Sun Wen[16] and modified using ArcGIS software 10.2;
Source:WGS 1984).
Primers and their mechanisms used in this study.
| Target genes | Primer | Sequences | Amplico | Annealing |
|---|---|---|---|---|
| 16 s rRNA | 1369F | CGGTGAATACGTTCYCGG | 128 | 55 |
| 1492R | GGWTACCTTGTTACGACTT | |||
| ECST784F | AGAAATTCCAAACGAACTTG | 93 | 55 | |
| ENC854R | CAGTGCTCTACCTCCATCATT | |||
| 23 s rRNA-F | GGT AGA GCA CTG TTT TGG CA | 87 | 60 | |
| 23 s rRNA-R | TGT CTC CCG TGA TAA CTT TCTC |
Figure 2(a) Heat map of the top 10 genera in each sample based on the reads (log2 transformed). (b) Horizontal distribution of E. coli and Enterococcus in Shahe Reservoir sediments. (The Fig. 3a has been prepared using Heml 1.0 software).
Figure 3(a) Heat map of the top 10 genera in each sample based on the reads (log2 transformed). (b) Vertical distribution of E. coli and Enterococcus in Shahe Reservoir sediments. (The Fig. 3a has been prepared using Heml 1.0 software).
Figure 4(a) Horizontal characteristics of TN and TP in the sediments. (b) Vertical characteristics of TN and TP in the sediments. (The figure was created by using ArcGIS software 10.2;
Source:WGS 1984).
Figure 5Pearson correlation analysis between pathogenic bacteria and TN and TP in the sediment. (The figure has been prepared using IBM SPSS 25.0 software).
Pearson correlation analysis between pathogenic bacteria and TN and TP in the sediment.
| Types of pathogens | Pearson correlation | 3# Sedimentary column | 14# Sedimentary column | 16# Sedimentary column | |||
|---|---|---|---|---|---|---|---|
| TN | TP | TN | TP | TN | TP | ||
| Correlation coefficient | − 0.940* | − 0.951* | 0.499 | − 0.945* | − 0.539 | − 0.318 | |
| Significance | 0.018 | 0.013 | 0.392 | 0.015 | 0.349 | 0.602 | |
| Correlation coefficient | − 0.742 | − 0.662 | 0.376 | − 0.912* | − 0.981** | − 0.941* | |
| Significance | 0.151 | 0.224 | 0.533 | 0.031 | 0.003 | 0.016 | |
*At the 0.05 level (two-tailed), the correlation is significant.
**At the 0.01 level (two-tailed), the correlation is significant.