Caseinolytic protease P (CLPP) activated by ONC201 inhibits proliferation and promotes apoptosis in human epithelial ovarian cancer cells by inducing mitochondrial dysfunction.

BACKGROUND: Caseinolytic protease P (CLPP) is a mitochondrial specific protein which has been reported to be related to tumor cell apoptosis. This study aims to explore the roles of CLPP in human epithelial ovarian cancer (EOC).
METHODS: We determined CLPP expression in paracancerous tissues and cancer tissues obtained from 20 EOC patients, and also in 4 EOC cell lines, and one normal ovarian cell line (IOSE-80). We knocked CLPP expression down in SK-OV-3 and A2780 cells and overexpressed it in SW626 and OVcar3 cells. The effect of CLPP expression on cell proliferation, mitochondrial membrane potential, and apoptosis was then assessed by flow cytometry assay. Furthermore, the effect of ONC201 (agonist of CLPP) on the EOC cell lines was also investigated.
RESULTS: The CLPP expression was markedly down-regulated in EOC cancer tissues, and the Kaplan-Meier Plotter database revealed its low expression was linked to poor prognosis in EOC patients. Low expression of CLPP up-regulated the expression of NADH: ubiquinone oxidoreductase subunit A12 (NDUFA12), succinate dehydrogenase complex flavoprotein subunit A (SDHA), and succinate dehydrogenase complex iron sulfur subunit B (SDHB), which are key members of the mitochondrial respiratory chain, and these up-regulated proteins further led to the increase of mitochondrial membrane potential, cell proliferation promotion and neoplasm metastasis. Conversely, while overexpression of CLPP led to the opposite results, including inducing the decrease of mitochondrial membrane potential and apoptosis. In addition, stimulation with ONC201 enhanced the function of CLPP in SW626 and OVcar3 cells, and silencing of CLPP could neutralize the effect of ONC201.
CONCLUSIONS: Our findings suggest that CLPP mediated mitochondrial dysfunction inhibits the proliferation and migration of EOC cells. 2021 Annals of Translational Medicine. All rights reserved.

Introduction

Epithelial ovarian cancer (EOC) is a common gynecological malignant tumor, accounting for 50–70% of ovarian tumors (1). Nearly 230,000 women are diagnosed and 150,000 die of the disease annually worldwide (2), and the trend in both is increasing (3,4). More than 70% of patients are diagnosed with advanced-stage EOC and widespread metastasis because of its asymptomatic nature (5). In addition, a very low overall 5-year survival is seen due to high recurrence rates resulting from chemoresistance (6,7). Multimodal treatment, including cytoreduction followed by platinum- and taxane-based chemotherapy, is the mainstay of initial treatment (8). Although researchers have made considerable efforts to improve early diagnosis and treatment, most patients are chemotherapy resistance, and tumor metastasis and recurrence are still the main challenges of clinical treatment (9,10). In advanced stages, extrapelvic planting, retroperitoneal or inguinal lymph node metastasis, and superficial liver metastasis are always seen (11,12). Therefore, it is important to find more drug targets to provide new treatment schemes allowing patients to resist chemoresistance. Enhancing aerobic respiration may be one of chemoresistance mechanisms. Upregulated aerobic respiration may produce more energy to deliver drugs out of cancer cells to promote cells survival. Therefore, targeting to mitochondrion might be a good drug therapy strategy.

Aerobic respiration chiefly occurs in the mitochondrion, and studies on its role in cancer suggest targeting it may be a new way to treat EOC (13). Mitochondria have their own protein synthesis and degradation apparatus to maintain normal functions, and mitochondrial caseinolytic protease P (CLPP) is one of the 15 mitochondrial proteases. CLPP is an oligomeric serine protease in the mitochondrial matrix (14) that is structurally similar to the cytoplasmic/nuclear proteasome, which has been found to be a potential target for cancer therapy (15). It has a double-ringed tetradecameric structure with a hollow chamber containing proteolytic active sites, and its main function in mitochondria is to degrade misfolded proteins (16,17). CLPP has been found to be related to tumor cell death and apoptosis (18,19). As an anti-cancer compound, ONC201 has been demonstrated to inhibit multiple cancer cell lines with low toxicity (20), and researchers have shown that it can bind CLPP non-covalently to induce mitochondrial dysfunction mediated apoptosis (16). However, whether the expression level of CLPP relates to the indication or prognosis of EOC patients is unclear. Therefore, we investigated the biologic effect and mechanism of CLPP in EOC cells. We present the following article in accordance with the MDAR reporting checklist (available at https://dx.doi.org/10.21037/atm-21-4321).

Methods

Patients and sampling

Para-carcinoma specimens and pathological specimens were collected from 20 EOC patients who did not receive chemotherapy after operation, and the histopathological diagnosis, stage, and grade of the EOC samples were identified by a pathologist from the Cancer Hospital Affiliated to Zhengzhou University. Each participant knew the purpose and meaning of the experiment and signed a written informed consent. The study protocol was reviewed and approved by the Institutional Review Board of Cancer Hospital Affiliated to Zhengzhou University (No. 20191016), in accordance with the Declaration of Helsinki (as revised in 2013), and informed consent was taken from all the patients.

Cell culture and treatment

Four human EOC cell lines (SW626, SK-OV-3, A2780 and OVcar3) and one normal ovarian cell line (IOSE-80) were obtained from the Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences. The five cell lines were cultured with Dulbecco Minimum Essential Medium (DMEM) (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with fetal bovine serum (FBS, 10%) (Gibco-BRL, USA), 100 µg/mL streptomycin, and 100 µg/mL penicillin G (Beyotime, Shanghai, China) at 37 °C in a humidified atmosphere containing 5% CO2. To knock down the expression of CLPP in SK-OV-3 and A2780, specific siRNAs targeted to CLPP were synthesized by GenePharma (Shanghai, China), and to overexpress CLPP in SW626 and OVcar3, CLPP CDS was cloned and recombined into the pGL3.0-basic plasmid. Recombinant plasmid or siRNAs were transfected into cells through Lipofectamine 2000 Reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions.

Real time quantitative PCR

RNA was extracted by TRIzol reagent (Invitrogen) and the cDNA was generated with RNA (1 µg), random primers and Primescript reverse transcriptase (Takara, Japan). The primers were designed through the Primer Premier 6.0 software. The primer sequences used for CLPP were 5'-ACTCAGTCATTCAACAGATGGC-3' (forward) and 5'-CCCTGTCTGCTACACTCCCT-3' (reverse), and for glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was 5'-TGTTCGTCATGGGTGTGAAC-3' (forward) and 5'-ATGGCATGGACTGTGGTCAT-3' (reverse). Quantitative reverse transcription-PCR (QPCR) was carried out in a 7500 Real-Time PCR System (Applied Biosystems, Life Technologies, USA) according to the manufacturer’s instructions of the SYBR Green qPCR kit (TOYOBO, Osaka, Japan). The PCR cycling conditions were 1 min at 94 °C, 35 cycles of denaturing for 30 s at 94 °C, annealing for 2 min at 60 °C, and extension for 1 min at 72 °C, finally saved briefly 5 min at 72 °C. GAPDH was used as an internal reference gene, and the 2−∆∆Ct method was applied to analysis gene expression level.

Western blotting

Total protein was separated from cells and tissue samples through RIPA buffer (protease inhibitor contained) for 0.5 h on ice then centrifuged, and the BCA Protein Assay kit (Beyotime) was used to access the concentrations of extracted protein. The extracted protein (20 µg) was then loaded into a sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) under reducing conditions for separation and transferred to a polyvinylidene fluoride membrane, followed by blocking with phosphate-buffered saline with Tween detergent (PBST) containing 5% evaporated skimmed milk at room temperature for 1h. After washing three times with PBST, the membranes were immerged with solution containing anti-CLPP (1:800 diluted; Abcam), anti-GAPDH (1:2,000 diluted; Abcam), anti-p-NDUFA12 (1:400 diluted; Abcam), anti- SDHA (1:500 diluted; Abcam), anti-SDHB (1:400 diluted; Abcam), anti-CASP3 (1:1,500 diluted; Abcam), or anti-Bcl-2 (1:1,500 diluted; Abcam) at 4 °C overnight. The membranes were then washed three times and incubated with HRP labeled anti-IgG antibody (BOSTER, Wuhan, China) at room temperature for 1 h. Finally, the signal was revealed with ECL-Plus reagent (Millipore, Billerica, MA, USA) and exposed to film. The gray value of protein bands were quantified using Image pro plus 6.0 software (Media Cybernetics, MA, USA).

Immunofluorescence

After treatment, five cell lines after treatment were harvested and fixed with 4% paraformaldehyde (PFA)−0.0075% glutaraldehyde for 15 min, permeabilized with PBST containing 0.1% Triton X-100, and blocked with 10% bovine serum albumin (BSA) (Sigma-Aldrich) for 30 min at room temperature. After incubation with anti-mouse CLPP diluted at 1/500 in PBST for 2 h at 4 °C, the cells were washed three times with PBST at room temperature, followed by incubation with Alexa FluorR 488 conjugate [F(ab’)2-Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Life technologies, refA11017] for 1 h. Furthermore, 4’,6-diamidino-2-phenylindole (DAPI) was used to stain the nucleus. Finally, images were obtained by a fluorescence microscope (Axio Imager.M2, Zeiss).

Cell viability assay

Cell viability was measured according to the instructions of the Cell Counting Kit-8 (Dojindo, Japan). Briefly, 1×104 corresponding cells were transferred into 96-well plates at 12, 24, 36, and 48 h after transfection. Each group had three replicates. Following this, 100 µL of solution containing WST-8 was added into each well and placed into an incubator for 4 h at 37 °C with 5% CO2. Subsequently, this was detected at 450 nm wavelength and the optical density value of each well was recorded by a Microplate Reader (Thermo Scientific).

Flow cytometry

The Annexin V-FITC/PI Apoptosis Kit (MultiSciences, Hangzhou, China) and Mitochondrial membrane potential test kit (JC-1) (Beyotime) were applied to determine cell apoptosis, cell cycle, and mitochondrial membrane potential through flow cytometry assay, respectively. Cells (5×105) were then harvested and washed three times by PBS after transfection, and incubated in 200 µL of Annexin V-FITC/PI solution for 15 min in the dark. Finally, the FITC fluorescence and PI fluorescence was detected by BD FACS Calibur™ flow cytometry (BD Biosciences, Franklin, NJ, USA).

Wound healing assay

For the detection of cell migration, corresponding cells were placed into six well plates (6×104 cells) with pre-installed silicone inserts, then cultured to confluent and pretreated with an artificial wound scratched by a sterile pipette tip. Six randomly selected fields of the wound were recorded by a CX41 Microscopy (Olympus, Tokyo, Japan).

Transwell assay

Cell metastatic ability was assessed using a Transwell system (Corning, NY, USA). Cells were incubated 36 h after transfection, then, treated with serum-free medium for 12 h. The medium was then removed and the cells were washed with PBS three times. Next, 700 µL medium containing 10% FBS was added to the lower chamber and 2×104 cells were seeded to the upper chamber, then incubated in air with 5% CO2 at 37 °C for 48 h. Subsequently, the cells on the lower side of the filter were fixed with 4% paraformaldehyde and stained with 0.1% crystal violet solution. Finally, six randomly selected fields were photographed by a CX41 Microscopy (Olympus) and the cell numbers counted. Cell invasions were similarly accessed as above, excepting a matrigel insert paved between the upper and low chamber.

Statistical analysis

GraphPad Prism 8 (GraphPad Software, San Diego, CA, USA) and SPSS 20.0 (SPSS, Chicago, IL, USA) were used for visualization and statistical analysis, respectively. All statistical values are showed as means ± standard deviation (SD), and statistical significance was considered when P≤0.05.

Results

CLPP is lowly expressed in EOC

To examine the difference in expression of CLPP between para-carcinoma specimens and pathological specimens, QPCR assay and Western blotting assay were applied using tissues from patients with EOC. The results showed the mRNA and protein level of CLPP were both evidently down-regulated in pathological specimens (), and the Kaplan-Meier Plotter database (https://kmplot.com/analysis/index.php?p=service&cancer=ovar) revealed that EOC patients with a lower expression of CLPP had a worse prognosis than those with high expression (). Next, we performed RT-qPCR, western blot, and immunofluorescence assays to examine the levels of CLPP expression in the EOC cell lines and normal ovarian cell line. Our results showed that CLPP expression was significantly downregulated in all the EOC cell lines when compared with the IOSE-80 cell line (). These results indicated that CLPP expression was downregulated in EOC.

Figure 1

Expression level of caseinolytic protease P (CLPP) in pathological specimens (Ca) and in para-carcinoma specimens (Pa). (A) mRNA level of CLPP detected by QPCR (n=20, ***P<0.001, paired t-test); (B) protein level of CLPP detected by Western blotting; (C) effect of CLPP expression level on prognosis of EOC patients in the Kaplan-Meier Plotter database.

Figure 2

Expression level of caseinolytic protease P (CLPP) in IOSE-8, SK-OV-3, A2780, SW626, and OVcar3 cells. (A) mRNA level of CLPP detected by QPCR (n=3, ***P<0.001, paired t-test); (B) protein level of CLPP detected by Western blotting; (C) distribution of CLPP in different cell detected by immunofluorescence. Scar bar =20 µm.

Silencing of CLPP promotes proliferation, migration, and invasion in SK-OV-3 and A2780 cells

To investigate whether CLPP affected human ovarian cancer cell proliferation, migration, and invasion, we knocked down its expression in SK-OV-3 and A2780 cells using siRNA. Subsequently, QPCR and Western blotting was applied to test the silencing efficacy, while CCK8 assay and EdU staining were used to assess cell viability. The data obtained showed that the expression of CLPP was observably decreased (). Consistently, Western blotting showed that three mitochondrial respiratory chain related proteins, NDUFA12, SDHA, and SDHB, were up-regulated after transfection, which demonstrated the mitochondrial respiratory metabolism enhancing of tumor cells (). Moreover, CLPP silencing significantly promoted cell proliferation 36 h after transfection (). Further, the silencing of CLPP observably inhibited cell apoptosis, while the monomer ratio of JC-1 was significantly decreased, which means the mitochondrial membrane potential was increased (). In addition, Transwell assay and wound healing assay revealed that knock-down of CLPP significantly promoted cell migration and invasion ().

Figure 3

Silencing of caseinolytic protease P (CLPP) promoted the viability and proliferation of SK-OV-3 and A2780 cells. SK-OV-3 and A2780 cells were transfected with siRNA specifically targeting CLPP. (A) Levels of CLPP expression after siRNA transfection were detected by RT-qPCR and Western blotting (n = 3, ***P<0.001, pared t-test). (B) Levels of NDUFA12 and SDHA protein expression after siRNA transfection were detected by Western blotting. (C-E) Cell viability at 12, 24, 36, and 48 h and proliferation at 36 h after siRNA transfection were measured by the CCK8 assay and Edu staining, respectively (*P<0.05, **P<0.01, paired t-test).

Figure 4

Silencing of caseinolytic protease P (CLPP) inhibited cell apoptosis and promoted cell migration and invasion. (A,B) Flow cytometry assays revealed the rates of the SK-OV-3 and A2780 cell apoptosis at 36 h after transfection; (C,D) mitochondrial membrane potential was measured by flow cytometry; (E,F) cell migration was detected by the wound healing assay (×40 magnification); (G,H) cell invasion was detected by the Transwell assay (×100 magnification). *P<0.05, **P<0.01, ***P<0.001, paired t-test.

Overexpression of CLPP inhibits mitochondrial function and induces apoptosis in SW626 and OVcar3 cells

To further prove the function of CLPP in EOC cells, we overexpressed CLPP in SW626 and OVcar3 cells. The QPCR and Western blotting assay showed that the expression of CLPP was observably increased (), Further, Western blotting showed that NDUFA12, SDHA, and SDHB were down-regulated after transfection, which demonstrated the mitochondrial respiratory metabolism reducing of tumor cells (). While CCK8 assay, EdU staining, and flow cytometry showed CLPP overexpression significantly inhibited cell viability and proliferation 36 h after transfection (). Results of flow cytometry assay revealed that the highly expressed CLPP evidently promoted cell apoptosis, while the monomer ratio of JC-1 was significantly increased by that, which means the mitochondrial membrane potential was decreased (). In addition, Transwell assay and wound healing assay revealed that expression of CLPP observably suppressed the metastatic ability of EOC cells ().

Figure 5

Overexpression of caseinolytic protease P (CLPP) reduced the viability and proliferation of SW626 and OVcar3 cells. SW626 and OVcar3 cells were transfected with the pGL3.0-CLPP plasmid. (A) The levels of CLPP expression after transfection were detected by RT-qPCR and Western blotting (n=3, ***P<0.001, paired t-test); (B) the levels of NDUFA12, SDHA, SDHB, CASP3, and Bcl-2 proteins after siRNA transfection were detected by Western blotting; (C-E) cell viability at 12, 24, 36, and 48 h and proliferation at 36 h after siRNA transfection were measured by the CCK8 assay and Edu staining, respectively (*P<0.05, ***P<0.001, paired t-test).

Figure 6

Overexpression of caseinolytic protease P (CLPP) promoted cell apoptosis and inhibited cell migration and invasion. CLPP was overexpressed in SW626 and OVcar3 cells. (A,B) Flow cytometry assays revealed the apoptosis rates of SW626 and OVcar3 cells at 36 h after transfection; (C,D) mitochondrial membrane potential was measured by flow cytometry; (E,F) Cell migration was detected by the wound healing assay (×40 magnification); (G,H) cell invasion was detected by the Transwell assay (×100 magnification). **P<0.01, ***P<0.001, paired t-test.

ONC201, agonist of CLPP, inhibits proliferation, migration, and invasion of EOC cells

An agonist of CLPP, ONC201 was also applied to investigate the function of CLPP in EOC cells, and SW626 and OVcar3 cells were stimulated with ONC201 (3 µmol/L) only or ONC201 + si-CLPP. The QPCR and Western blotting assay revealed that the expression of CLPP was significantly up-regulated after stimulation with ONC201 only, while significantly down-regulated after transfected with si-CLPP (). Western blotting showed that the protein level of NDUFA12, SDHA, SDHB, and Bcl-2 decreased, while that of CASP3 increased after ONC201 stimulation (). CCK8 assay and EdU staining showed that cell viability and proliferation were significantly inhibited by ONC201, while si-CLPP could reduce the inhibition to some extent (). Further, the stimulation of ONC201 observably promoted cell apoptosis, and the monomer ratio of JC-1 was significantly increased (). In addition, Transwell assay and wound healing assay revealed that stimulation of ONC201 significantly inhibited cell migration and invasion (). Of note, silencing of CLPP could reduce the effects of ONC201 on EOC cells.

Figure 7

ONC201 reduced the viability and proliferation of SW626 and OVcar3 cells. SW626 and OVcar3 cells were treated with ONC201 after transfection with control siRNA or siRNA targeting caseinolytic protease P (CLPP). (A) Levels of CLPP expression were examined via RT-qPCR and Western blotting (n=3, ***P<0.001, One-Way ANOVA). (B) The levels of NDUFA12, SDHA, SDHB, CASP3, and Bcl-2 proteins were detected by Western blotting. (C-E) Cell viability at 12, 24, 36, and 48 h and proliferation at 36 h after transfection were measured by the CCK8 assay and Edu staining, respectively. *P<0.05, ***P<0.001, vs. Control; #P<0.05, ###P<0.001, vs. ONC201, One-Way ANOVA.

Figure 8

ONC201 promoted apoptosis and inhibited the migration and invasion of SW626 and OVcar3 cells. (A,B) Flow cytometry assays revealed the apoptosis rates of SW626 and OVcar3 cells at 36 h after treatment with ONC201; (C,D) mitochondrial membrane potential was measured by flow cytometry; (E,F) cell migration was detected by wound healing assay (×40 magnification); (G,H) cell invasion was detected by the Transwell assay (×100 magnification). **P<0.01, ***P<0.001, vs. Control; ##P<0.01, ###P<0.001, vs. ONC201, One-Way ANOVA.

Discussion

Although there have been many efforts to improve treatment, therapy for EOC has remained largely unchanged and ineffective (21), and there remains an urgent need to discover valid drug targets to diagnose and treat EOC patients. Here, we identified CLPP as one of the 15 mitochondrial proteases whose agonist might be cytotoxic to EOC cells, and we testified that the expression of CLPP in four EOC cells lines was significantly lower compared with normal ovarian cell line IOSE-80, which implied us CLPP might be related to tumor progression.

Evidence has revealed that mitochondria play a major role in the maintenance and therapy resistance of leukemias (16,22) and certain solid tumors (23). In addition, studies have found that the effective destruction of mitochondrial integrity may be used as a tumor treatment strategy (24,25).

CLPP is a protease conserved from bacteria to humans and is relevant to the mitochondrial unfolded protein response. CLPP could coordinate fertility, hearing, growth (26), and cancer cell viability (16,22), and its hyperactivation selectively induced cancer cell death through selectively degradating respiratory chain protein substrate and inducing mitochondrial disorder, which is independent of p53 status (16). In the present study, the expression of CLPP was remarkably higher in cancer tissue than in para-carcinoma tissue. Knock-down of CLPP could promote cell proliferation, migration, and invasion in SK-OV-3 and A2780 cells, while overexpression inhibited these processes in SW626 and OVcar3 cells. Proteins interacting with CLPP play an important role in respiratory chain and mitochondrial metabolism (22), and NDUFA12, SDHA, and SDHB are key members of the mitochondrial respiratory chain whose expression was affected by CLPP. ONC201 is an anti-cancer compound that effectively kills a variety of cancer cells while less toxic to normal cells (27-30), and Ishizawa et al. confirmed that CLPP was a direct target for ONC201 (16). In EOC cells, ONC201 activated CLPP expression, followed by decrease of NDUFA12, SDHA, and SDHB proteins, and the reduction of these protein could induce mitochondrial dysfunctions (31-33). Subsequently, the mitochondrial membrane potential and expression of B-cell lymphoma-2 (Bcl-2) was decreased, while the expression of caspase-3 (CASP3) was increased, which resulted in mitochondrial apoptosis in EOC cells. Most noteworthy, we found that the migration and invasion of EOC cells were also inhibited by overexpression of CLPP or stimulation of ONC201, which may be because disorder of the mitochondrial respiratory chain induced by CLPP also caused the movement capacity of tumor cells. A lack of direct evidence to prove this was a limit of this study, although it has been reported that pro-apoptotic BCL2-associated X (Bax) promotes mesenchymal-epithelial transition by binding to mitochondrial respiratory complex-I and antagonizing the malignant actions of pro-survival Bcl-2 proteins (34). The detailed mechanism of how CLPP regulates EOC cells migration requires further study.

In conclusion, altering the expression of CLPP leads to mitochondrial dysfunction and affects the proliferation and migration of EOC cells. CLPP may be a target to treat EOC.

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