Literature DB >> 34726176

Finding order in chaos - nanocrystals in amorphous protein gels.

Matthew W Bowler1.   

Abstract

Entities:  

Keywords:  amorphous protein gels; nanocrystals

Mesh:

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Year:  2021        PMID: 34726176      PMCID: PMC8561820          DOI: 10.1107/S2053230X21010852

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


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Methods to coax macromolecules into ordered lattices are bread and butter to the readers of Acta Crystallographica Section F. This is far from an easy process, and when it succeeds there is an enormous variety in the size, shape and order found within these crystals (Svensson et al., 2019 ▸). Tens of thousands of trials are often needed to find the components of a supersaturated solution that will induce the formation of crystals; can anything be salvaged from all the failed crystallization experiments? Amorphous material is often found during screening, and can blaze a trail to crystallization, but is there order in the chaos? In this issue, Greene and colleagues (Greene et al., 2021 ▸) add to their discovery that dense phases of ovalbumin contain highly ordered regions (Greene et al., 2015 ▸), by showing the same phenomenon in a number of other proteins. The dense phases that proteins form during the crystallization process of salting-out have been largely ignored with respect to their macrostructure. The rise of the XFELs (Chapman et al., 2011 ▸; Spence, 2017 ▸), and more recently microED (Mu et al., 2021 ▸; Wolff et al., 2020 ▸), has made the collection of data from ordered structures on the nanometre scale a real prospect. This justifies the investigation of nanocrystals in order to gain atomic details of macromolecules that can be hard to crystallize. By detailed characterization using X-ray and neutron scattering techniques, combined with electron microscopy and modelling, the authors beautifully demonstrate a variety of microstructures that can be formed within protein gels. The researchers investigated three proteins, all adopting different microstructures: RNAse A that forms nanocrystalline sheets; immunoglobulin G, that forms hexagonally packed tubes; and lysozyme, that forms short, ordered chains. Each of these examples show similarities to the packing observed in fully fledged crystals, demonstrating that this phase is likely a step towards large crystals and, more importantly, could be common to this type of ‘amorphous’ protein gel. While the number of examples is still perhaps limited, this study clearly shows that protein gels tend to contain microstructures. This can therefore be exploited to gain structural insights into systems that have proved difficult to crystallize and may shed light on the processes of crystallization itself. We look forward to seeing the first diffraction images from these fascinating protein phases.
  6 in total

1.  Local Crystalline Structure in an Amorphous Protein Dense Phase.

Authors:  Daniel G Greene; Shannon Modla; Norman J Wagner; Stanley I Sandler; Abraham M Lenhoff
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

2.  Femtosecond X-ray protein nanocrystallography.

Authors:  Henry N Chapman; Petra Fromme; Anton Barty; Thomas A White; Richard A Kirian; Andrew Aquila; Mark S Hunter; Joachim Schulz; Daniel P DePonte; Uwe Weierstall; R Bruce Doak; Filipe R N C Maia; Andrew V Martin; Ilme Schlichting; Lukas Lomb; Nicola Coppola; Robert L Shoeman; Sascha W Epp; Robert Hartmann; Daniel Rolles; Artem Rudenko; Lutz Foucar; Nils Kimmel; Georg Weidenspointner; Peter Holl; Mengning Liang; Miriam Barthelmess; Carl Caleman; Sébastien Boutet; Michael J Bogan; Jacek Krzywinski; Christoph Bostedt; Saša Bajt; Lars Gumprecht; Benedikt Rudek; Benjamin Erk; Carlo Schmidt; André Hömke; Christian Reich; Daniel Pietschner; Lothar Strüder; Günter Hauser; Hubert Gorke; Joachim Ullrich; Sven Herrmann; Gerhard Schaller; Florian Schopper; Heike Soltau; Kai-Uwe Kühnel; Marc Messerschmidt; John D Bozek; Stefan P Hau-Riege; Matthias Frank; Christina Y Hampton; Raymond G Sierra; Dmitri Starodub; Garth J Williams; Janos Hajdu; Nicusor Timneanu; M Marvin Seibert; Jakob Andreasson; Andrea Rocker; Olof Jönsson; Martin Svenda; Stephan Stern; Karol Nass; Robert Andritschke; Claus-Dieter Schröter; Faton Krasniqi; Mario Bott; Kevin E Schmidt; Xiaoyu Wang; Ingo Grotjohann; James M Holton; Thomas R M Barends; Richard Neutze; Stefano Marchesini; Raimund Fromme; Sebastian Schorb; Daniela Rupp; Marcus Adolph; Tais Gorkhover; Inger Andersson; Helmut Hirsemann; Guillaume Potdevin; Heinz Graafsma; Björn Nilsson; John C H Spence
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

Review 3.  An Overview of Microcrystal Electron Diffraction (MicroED).

Authors:  Xuelang Mu; Cody Gillman; Chi Nguyen; Tamir Gonen
Journal:  Annu Rev Biochem       Date:  2021-06-20       Impact factor: 27.258

Review 4.  XFELs for structure and dynamics in biology.

Authors:  J C H Spence
Journal:  IUCrJ       Date:  2017-05-10       Impact factor: 4.769

5.  A comparative anatomy of protein crystals: lessons from the automatic processing of 56 000 samples.

Authors:  Olof Svensson; Maciej Gilski; Didier Nurizzo; Matthew W Bowler
Journal:  IUCrJ       Date:  2019-07-10       Impact factor: 4.769

6.  Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals.

Authors:  Alexander M Wolff; Iris D Young; Raymond G Sierra; Aaron S Brewster; Michael W Martynowycz; Eriko Nango; Michihiro Sugahara; Takanori Nakane; Kazutaka Ito; Andrew Aquila; Asmit Bhowmick; Justin T Biel; Sergio Carbajo; Aina E Cohen; Saul Cortez; Ana Gonzalez; Tomoya Hino; Dohyun Im; Jake D Koralek; Minoru Kubo; Tomas S Lazarou; Takashi Nomura; Shigeki Owada; Avi J Samelson; Tomoyuki Tanaka; Rie Tanaka; Erin M Thompson; Henry van den Bedem; Rahel A Woldeyes; Fumiaki Yumoto; Wei Zhao; Kensuke Tono; Sebastien Boutet; So Iwata; Tamir Gonen; Nicholas K Sauter; James S Fraser; Michael C Thompson
Journal:  IUCrJ       Date:  2020-02-26       Impact factor: 4.769

  6 in total

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