| Literature DB >> 34716504 |
Serap Tutgun Onrat1, İbrahim Etem Dural2, Zafer Yalım2, Ersel Onrat2.
Abstract
BACKGROUND: Takotsubo Cardiomyopathy (TC) is a rare disorder that is mostly caused by stress and is often misdiagnosed. We aimed to analyze Takotsubo Syndrome at the molecular level by using the Oxford Nanopore Minion Device and its protocol. METHODS ANDEntities:
Keywords: ADRB1; ADRB2; Cardiomyopathy; Exome; Stress; Takotsubo
Mesh:
Substances:
Year: 2021 PMID: 34716504 PMCID: PMC8555722 DOI: 10.1007/s11033-021-06816-w
Source DB: PubMed Journal: Mol Biol Rep ISSN: 0301-4851 Impact factor: 2.742
Fig. 1a Increased activation of the sympathetic nervous system due to stress-related emotional or physical events, increases catecholamines (epinephrine, norepinephrine, dopamine), and this increase stimulates adrenergic receptors. Specifically, transmissions in signal transduction pathways triggered by the agonist response of β-ARs act as essential regulators of heart rate, systolic and diastolic function, and myocardial metabolism and thus systolic dysfunction may more readily develop in the left ventricle of the heart under stress.(Created in BioRender.com). b This protocol describes how to carry out native barcoding of genomic DNA using the Native Barcoding Expansion 1–12 (EXP-NBD104), in conjunction with the Ligation Sequencing Kit (SQK-LSK109)
Demographic and clinical characteristics of the study group
| Variables | Takotsubo | Control | P value |
|---|---|---|---|
| Male | 2 (%22.2) | 3 (%33.3) | 0.599 |
| Women | 7 (%77.8) | 6 (%66.7) | |
| Age (years) | 53 ± 12.2 | 52.4 ± 9.9 | 0.917 |
| BMİ (kg/m2) | 28.6 ± 4.06 | 27.6 ± 4.09 | 0.616 |
| HT | 2 (%22.2) | 2 (%22.2) | 1 |
| DM | 3 (%33.3) | 1 (%11.1) | 0.257 |
| Throid Dys | 0 | 1 (%11.1) | 0.303 |
| Total cholesterol, mg/dl | 161.5 ± 45.8 | 204.5 ± 65 | 0.125 |
| Trigliserid (mg/dl) | 182.2 ± 80.5 | 141.3 ± 60.5 | 0.255 |
| HDL cholesterol (mg/dl) | 43.3 ± 17 | 51.5 ± 12.5 | 0.261 |
| LDL cholesterol (mg/dl) | 101.5 ± 44.3 | 155.7 ± 60.3 | 0.045 |
| White blood cell count, µl | 10.09 ± 1.6 | 7.3 ± 2.1 | 0.007# |
| Haemoglobin, g/dl | 13.9 ± 1.7 | 13.8 ± 1.6 | 0.891 |
| Platelet, 103/mm3 | 292.4 ± 75.4 | 276 ± 91.3 | 0.683 |
| Lymphocyte count, µl | 2.7 ± 0.8 | 2.5 ± 0.5 | 0.560 |
| Neutrophil count, µl | 6.3 ± 1.7 | 3.8 ± 1.7 | 0.009# |
| Monocyte count, µl | 0.67 ± 0.098 | 0.59 ± 0.17 | 0.261 |
| Alt | 22.1 ± 12.4 | 24.4 ± 16.4 | 0.739 |
| Ast | 19.2 ± 4.6 | 24.1 ± 9.1 | 0.173 |
| Kreatinine | 0.8 ± 0.2 | 0.7 ± 0.16 | 0.559 |
| F.glukoz | 117.3 ± 27.7 | 100.7 ± 7.1 | 0.102 |
| TSH | 1.5 ± 1.1 | 1.6 ± 0.8 | 0.720 |
| T4 | 1.3 ± 0.18 | 1.2 ± 0.21 | 0.411 |
| C-reactive protein, mg/dl | 0.4 ± 0.27 | 0.3 ± 0.19 | 0.425 |
Echocardiographic results of the Study and Control groups
| Variables | Takotsubo | Control | P value |
|---|---|---|---|
| LVEDD (mm) | 47.5 ± 4.9 | 44.2 ± 1.7 | 0.072 |
| LVESD (mm) | 33.2 ± 7.8 | 27.7 ± 1.5 | 0.059 |
| LVEF Simpson (%) | 50.3 ± 11.5 | 64.2 ± 2.8 | 0.003# |
| IVS (mm) | 11.5 ± 1.58 | 11.1 ± 1.53 | 0.555 |
| PW (mm) | 10.8 ± 1.53 | 10.6 ± 1.1 | 0.730 |
| LA (mm) | 34.1 ± 3.8 | 32.2 ± 4.7 | 0.372 |
| Ao (mm) | 25 ± 2.1 | 26 ± 2.1 | 0.339 |
LVEDD left ventricular end diastolic diameter, LVESD left ventricular end systolic diameter, LVEF left ventricular ejection fraction, IVS interventricular septum, PW posterior wall, LA left atrium, Ao Aort root diameter, n number
#p < 0.05 statistical significance
Data of the Alignment results of ADRB1 and ADRB2 gene regions according to the analysis performed
| Analysis type | Primer F-R* | Barcode kiti | Barcode no | Sequencing Kit | Flowcell type | Received data size (MBfastq/barcode) | ADRB1 Aligned Read number | ADRB2 Aligned Read number |
|---|---|---|---|---|---|---|---|---|
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD01 | SQK-LSK109 | FLO-MIN106 | 137 | 137701 | 7 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD02 | SQK-LSK109 | FLO-MIN106 | 183 | 165975 | 8 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD03 | SQK-LSK109 | FLO-MIN106 | 95 | 87236 | 8 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD04 | SQK-LSK109 | FLO-MIN106 | 168 | 156156 | 24 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD05 | SQK-LSK109 | FLO-MIN106 | 88 | 96652 | 3 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD06 | SQK-LSK109 | FLO-MIN106 | 35 | 37285 | 3 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD07 | SQK-LSK109 | FLO-MIN106 | 123 | 109483 | 19 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD08 | SQK-LSK109 | FLO-MIN106 | 66 | 72119 | 0 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD09 | SQK-LSK109 | FLO-MIN106 | 151 | 154890 | 11 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD01 | SQK-LSK109 | FLO-MIN106 | 114 | 121707 | 2 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD02 | SQK-LSK109 | FLO-MIN106 | 110 | 117779 | 6 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD03 | SQK-LSK109 | FLO-MIN106 | 131 | 143815 | 1 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD04 | SQK-LSK109 | FLO-MIN106 | 111 | 123712 | 0 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD05 | SQK-LSK109 | FLO-MIN106 | 118 | 124389 | 2 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD06 | SQK-LSK109 | FLO-MIN106 | 81 | 88196 | 1 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD07 | SQK-LSK109 | FLO-MIN106 | 118 | 127283 | 2 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD08 | SQK-LSK109 | FLO-MIN106 | 107 | 117082 | 2 |
| ADRB1-2 target region | ADRB1-ADRB2 | EXP-NBD104 | NBD09 | SQK-LSK109 | FLO-MIN106 | 157 | 169639 | 4 |
*F Primer: ADRB1 5'-AGACGTGCTATGTGTGACGG-3' ADRB2 5'-TGGATTGTGTCGGGCCTTA-3'
R Primer: ADRB1 5'-AGCACTTGGGGTCGTTGTAG-3' ADRB2 5'-TGGCACGGTACCAGTGCAT-3'
Fig. 2a ADRB1 Reference-Homo sapiens-NG_012187.1 Homo sapiens adrenoceptor beta 1 (ADRB1), RefSeqGene on chromosome10–Geneious Prime 2021.0.3 (www.geneious.com) view. b ADRB2 Reference—Homo sapiens—NG_016421.2 Homo sapiens adrenoceptor beta 2 (ADRB2), RefSeqGene on chromosome 5—Geneious Prime 2021.0.3 (www.geneious.com) view. c Alignment file created with consensus sequences. d The starting region where the change is seen in the alignment file created with the consensus sequences