Literature DB >> 34710325

Differential BET Bromodomain Inhibition by Dihydropteridinone and Pyrimidodiazepinone Kinase Inhibitors.

Rezaul Md Karim1,2, Melissa J Bikowitz1,2, Alice Chan1, Jin-Yi Zhu1, Dylan Grassie1, Andreas Becker3, Norbert Berndt1, Steven Gunawan1, Nicholas J Lawrence1, Ernst Schönbrunn1.   

Abstract

BRD4 and other members of the bromodomain and extraterminal (BET) family of proteins are promising epigenetic targets for the development of novel therapeutics. Among the reported BRD4 inhibitors are dihydropteridinones and benzopyrimidodiazepinones originally designed to target the kinases PLK1, ERK5, and LRRK2. While these kinase inhibitors were identified as BRD4 inhibitors, little is known about their binding potential and structural details of interaction with the other BET bromodomains. We comprehensively characterized a series of known and newly identified dual BRD4-kinase inhibitors against all eight individual BET bromodomains. A detailed analysis of 23 novel cocrystal structures of BET-kinase inhibitor complexes in combination with direct binding assays and cell signaling studies revealed significant differences in molecular shape complementarity and inhibitory potential. Collectively, the data offer new insights into the action of kinase inhibitors across BET bromodomains, which may aid the development of drugs to inhibit certain BET proteins and kinases differentially.

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Year:  2021        PMID: 34710325      PMCID: PMC9119049          DOI: 10.1021/acs.jmedchem.1c01096

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   8.039


  34 in total

1.  Mapping the Degradable Kinome Provides a Resource for Expedited Degrader Development.

Authors:  Katherine A Donovan; Fleur M Ferguson; Jonathan W Bushman; Nicholas A Eleuteri; Debabrata Bhunia; SeongShick Ryu; Li Tan; Kun Shi; Hong Yue; Xiaoxi Liu; Dennis Dobrovolsky; Baishan Jiang; Jinhua Wang; Mingfeng Hao; Inchul You; Mingxing Teng; Yanke Liang; John Hatcher; Zhengnian Li; Theresa D Manz; Brian Groendyke; Wanyi Hu; Yunju Nam; Sandip Sengupta; Hanna Cho; Injae Shin; Michael P Agius; Irene M Ghobrial; Michelle W Ma; Jianwei Che; Sara J Buhrlage; Taebo Sim; Nathanael S Gray; Eric S Fischer
Journal:  Cell       Date:  2020-12-03       Impact factor: 41.582

2.  MM/GBSA binding energy prediction on the PDBbind data set: successes, failures, and directions for further improvement.

Authors:  Paulette A Greenidge; Christian Kramer; Jean-Christophe Mozziconacci; Romain M Wolf
Journal:  J Chem Inf Model       Date:  2012-12-27       Impact factor: 4.956

3.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

4.  Structure-Guided Design and Development of Potent and Selective Dual Bromodomain 4 (BRD4)/Polo-like Kinase 1 (PLK1) Inhibitors.

Authors:  Shuai Liu; Hailemichael O Yosief; Lingling Dai; He Huang; Gagan Dhawan; Xiaofeng Zhang; Alex M Muthengi; Justin Roberts; Dennis L Buckley; Jennifer A Perry; Lei Wu; James E Bradner; Jun Qi; Wei Zhang
Journal:  J Med Chem       Date:  2018-08-30       Impact factor: 7.446

5.  Identification of novel, potent and selective inhibitors of Polo-like kinase 1.

Authors:  Shaoqing Chen; David Bartkovitz; Jianping Cai; Yi Chen; Zhi Chen; Xin-Jie Chu; Kang Le; Nam T Le; Kin-Chun Luk; Steve Mischke; Goli Naderi-Oboodi; John F Boylan; Tom Nevins; Weiguo Qing; Yingsi Chen; Peter M Wovkulich
Journal:  Bioorg Med Chem Lett       Date:  2011-12-01       Impact factor: 2.823

6.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation.

Authors:  Omer Gilan; Inmaculada Rioja; Rab K Prinjha; Mark A Dawson; Kathy Knezevic; Matthew J Bell; Miriam M Yeung; Nicola R Harker; Enid Y N Lam; Chun-Wa Chung; Paul Bamborough; Massimo Petretich; Marjeta Urh; Stephen J Atkinson; Anna K Bassil; Emma J Roberts; Dane Vassiliadis; Marian L Burr; Alex G S Preston; Christopher Wellaway; Thilo Werner; James R Gray; Anne-Marie Michon; Thomas Gobbetti; Vinod Kumar; Peter E Soden; Andrea Haynes; Johanna Vappiani; David F Tough; Simon Taylor; Sarah-Jane Dawson; Marcus Bantscheff; Matthew Lindon; Gerard Drewes; Emmanuel H Demont; Danette L Daniels; Paola Grandi
Journal:  Science       Date:  2020-03-19       Impact factor: 47.728

8.  Structural and Atropisomeric Factors Governing the Selectivity of Pyrimido-benzodiazipinones as Inhibitors of Kinases and Bromodomains.

Authors:  Jinhua Wang; Tatiana Erazo; Fleur M Ferguson; Dennis L Buckley; Nestor Gomez; Pau Muñoz-Guardiola; Nora Diéguez-Martínez; Xianming Deng; Mingfeng Hao; Walter Massefski; Oleg Fedorov; Nana Kwaku Offei-Addo; Paul M Park; Lingling Dai; Amy DiBona; Kelly Becht; Nam Doo Kim; Michael R McKeown; Justin M Roberts; Jinwei Zhang; Taebo Sim; Dario R Alessi; James E Bradner; Jose M Lizcano; Stephen C Blacklow; Jun Qi; Xiang Xu; Nathanael S Gray
Journal:  ACS Chem Biol       Date:  2018-08-31       Impact factor: 5.100

9.  Identification of a novel orally bioavailable ERK5 inhibitor with selectivity over p38α and BRD4.

Authors:  Stephanie M Myers; Duncan C Miller; Lauren Molyneux; Mercedes Arasta; Ruth H Bawn; Timothy J Blackburn; Simon J Cook; Noel Edwards; Jane A Endicott; Bernard T Golding; Roger J Griffin; Tim Hammonds; Ian R Hardcastle; Suzannah J Harnor; Amy B Heptinstall; Pamela A Lochhead; Mathew P Martin; Nick C Martin; David R Newell; Paul J Owen; Leon C Pang; Tristan Reuillon; Laurent J M Rigoreau; Huw D Thomas; Julie A Tucker; Lan-Zhen Wang; Ai-Ching Wong; Martin E M Noble; Stephen R Wedge; Celine Cano
Journal:  Eur J Med Chem       Date:  2019-05-25       Impact factor: 6.514

10.  Designing Dual Inhibitors of Anaplastic Lymphoma Kinase (ALK) and Bromodomain-4 (BRD4) by Tuning Kinase Selectivity.

Authors:  Ellen Watts; David Heidenreich; Elizabeth Tucker; Monika Raab; Klaus Strebhardt; Louis Chesler; Stefan Knapp; Benjamin Bellenie; Swen Hoelder
Journal:  J Med Chem       Date:  2019-02-21       Impact factor: 7.446

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  1 in total

1.  Pharmacologic screen identifies active combinations with BET inhibitors and LRRK2 as a novel putative target in lymphoma.

Authors:  Filippo Spriano; Giulio Sartori; Chiara Tarantelli; Marilia Barreca; Gaetanina Golino; Andrea Rinaldi; Sara Napoli; Michele Mascia; Lorenzo Scalise; Alberto J Arribas; Luciano Cascione; Emanuele Zucca; Anastasios Stathis; Eugenio Gaudio; Francesco Bertoni
Journal:  EJHaem       Date:  2022-07-27
  1 in total

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