Literature DB >> 34705523

Comment on "Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2".

Michael A Martin1, Katia Koelle2,3.   

Abstract

A reanalysis of SARS-CoV-2 deep sequencing data from donor-recipient pairs indicates that transmission bottlenecks are very narrow (one to three virions).

Entities:  

Mesh：

Year:  2021        PMID： 34705523      PMCID： PMC9301528          DOI： 10.1126/scitranslmed.abh1803

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN： 1946-6234            Impact factor:   19.319


  8 in total

1.  Transmission Bottleneck Size Estimation from Pathogen Deep-Sequencing Data, with an Application to Human Influenza A Virus.

Authors:  Ashley Sobel Leonard; Daniel B Weissman; Benjamin Greenbaum; Elodie Ghedin; Katia Koelle
Journal:  J Virol       Date:  2017-06-26       Impact factor: 5.103

2.  Stochastic processes constrain the within and between host evolution of influenza virus.

Authors:  John T McCrone; Robert J Woods; Emily T Martin; Ryan E Malosh; Arnold S Monto; Adam S Lauring
Journal:  Elife       Date:  2018-05-03       Impact factor: 8.140

3.  A new coronavirus associated with human respiratory disease in China.

Authors:  Fan Wu; Su Zhao; Bin Yu; Yan-Mei Chen; Wen Wang; Zhi-Gang Song; Yi Hu; Zhao-Wu Tao; Jun-Hua Tian; Yuan-Yuan Pei; Ming-Li Yuan; Yu-Ling Zhang; Fa-Hui Dai; Yi Liu; Qi-Min Wang; Jiao-Jiao Zheng; Lin Xu; Edward C Holmes; Yong-Zhen Zhang
Journal:  Nature       Date:  2020-02-03       Impact factor: 49.962

4.  Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2.

Authors:  Alexandra Popa; Jakob-Wendelin Genger; Michael D Nicholson; Thomas Penz; Daniela Schmid; Stephan W Aberle; Benedikt Agerer; Alexander Lercher; Lukas Endler; Henrique Colaço; Mark Smyth; Michael Schuster; Miguel L Grau; Francisco Martínez-Jiménez; Oriol Pich; Wegene Borena; Erich Pawelka; Zsofia Keszei; Martin Senekowitsch; Jan Laine; Judith H Aberle; Monika Redlberger-Fritz; Mario Karolyi; Alexander Zoufaly; Sabine Maritschnik; Martin Borkovec; Peter Hufnagl; Manfred Nairz; Günter Weiss; Michael T Wolfinger; Dorothee von Laer; Giulio Superti-Furga; Nuria Lopez-Bigas; Elisabeth Puchhammer-Stöckl; Franz Allerberger; Franziska Michor; Christoph Bock; Andreas Bergthaler
Journal:  Sci Transl Med       Date:  2020-11-23       Impact factor: 17.956

5.  Temporal dynamics of SARS-CoV-2 mutation accumulation within and across infected hosts.

Authors:  Andrew L Valesano; Kalee E Rumfelt; Derek E Dimcheff; Christopher N Blair; William J Fitzsimmons; Joshua G Petrie; Emily T Martin; Adam S Lauring
Journal:  PLoS Pathog       Date:  2021-04-07       Impact factor: 6.823

6.  Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck.

Authors:  Katarina M Braun; Gage K Moreno; Peter J Halfmann; Emma B Hodcroft; David A Baker; Emma C Boehm; Andrea M Weiler; Amelia K Haj; Masato Hatta; Shiho Chiba; Tadashi Maemura; Yoshihiro Kawaoka; Katia Koelle; David H O'Connor; Thomas C Friedrich
Journal:  PLoS Pathog       Date:  2021-02-26       Impact factor: 7.464

7.  SARS-CoV-2 within-host diversity and transmission.

Authors:  Katrina A Lythgoe; Matthew Hall; Luca Ferretti; Mariateresa de Cesare; George MacIntyre-Cockett; Amy Trebes; Monique Andersson; Newton Otecko; Emma L Wise; Nathan Moore; Jessica Lynch; Stephen Kidd; Nicholas Cortes; Matilde Mori; Rebecca Williams; Gabrielle Vernet; Anita Justice; Angie Green; Samuel M Nicholls; M Azim Ansari; Lucie Abeler-Dörner; Catrin E Moore; Timothy E A Peto; David W Eyre; Robert Shaw; Peter Simmonds; David Buck; John A Todd; Thomas R Connor; Shirin Ashraf; Ana da Silva Filipe; James Shepherd; Emma C Thomson; David Bonsall; Christophe Fraser; Tanya Golubchik
Journal:  Science       Date:  2021-03-09       Impact factor: 47.728
  8 in total
  9 in total

1.  How months-long COVID infections could seed dangerous new variants.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2022-06       Impact factor: 49.962

2.  Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.

Authors:  William W Hannon; Pavitra Roychoudhury; Hong Xie; Lasata Shrestha; Amin Addetia; Keith R Jerome; Alexander L Greninger; Jesse D Bloom
Journal:  Virus Evol       Date:  2022-06-16

3.  Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness.

Authors:  Ruian Ke; Pamela P Martinez; Rebecca L Smith; Laura L Gibson; Agha Mirza; Madison Conte; Nicholas Gallagher; Chun Huai Luo; Junko Jarrett; Ruifeng Zhou; Abigail Conte; Tongyu Liu; Mireille Farjo; Kimberly K O Walden; Gloria Rendon; Christopher J Fields; Leyi Wang; Richard Fredrickson; Darci C Edmonson; Melinda E Baughman; Karen K Chiu; Hannah Choi; Kevin R Scardina; Shannon Bradley; Stacy L Gloss; Crystal Reinhart; Jagadeesh Yedetore; Jessica Quicksall; Alyssa N Owens; John Broach; Bruce Barton; Peter Lazar; William J Heetderks; Matthew L Robinson; Heba H Mostafa; Yukari C Manabe; Andrew Pekosz; David D McManus; Christopher B Brooke
Journal:  Nat Microbiol       Date:  2022-04-28       Impact factor: 30.964

4.  Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters.

Authors:  Pilar Gallego-García; Nair Varela; Nuria Estévez-Gómez; Loretta De Chiara; Iria Fernández-Silva; Diana Valverde; Nicolae Sapoval; Todd J Treangen; Benito Regueiro; Jorge Julio Cabrera-Alvargonzález; Víctor Del Campo; Sonia Pérez; David Posada
Journal:  Virus Evol       Date:  2022-02-04

5.  Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong.

Authors:  Haogao Gu; Ruopeng Xie; Dillon C Adam; Joseph L-H Tsui; Daniel K Chu; Lydia D J Chang; Sammi S Y Cheuk; Shreya Gurung; Pavithra Krishnan; Daisy Y M Ng; Gigi Y Z Liu; Carrie K C Wan; Samuel S M Cheng; Kimberly M Edwards; Kathy S M Leung; Joseph T Wu; Dominic N C Tsang; Gabriel M Leung; Benjamin J Cowling; Malik Peiris; Tommy T Y Lam; Vijaykrishna Dhanasekaran; Leo L M Poon
Journal:  Nat Commun       Date:  2022-02-08       Impact factor: 14.919

6.  Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat.

Authors:  William W Hannon; Pavitra Roychoudhury; Hong Xie; Lasata Shrestha; Amin Addetia; Keith R Jerome; Alexander L Greninger; Jesse D Bloom
Journal:  bioRxiv       Date:  2022-02-09

7.  Modeling insights into SARS-CoV-2 respiratory tract infections prior to immune protection.

Authors:  Alexander Chen; Timothy Wessler; Katherine Daftari; Kameryn Hinton; Richard C Boucher; Raymond Pickles; Ronit Freeman; Samuel K Lai; M Gregory Forest
Journal:  Biophys J       Date:  2022-04-02       Impact factor: 3.699

8.  Within-host diversity of SARS-CoV-2 lineages and effect of vaccination.

Authors:  Leo Poon; Haogao Gu; Ahmed Abdul Quadeer; Pavithra Krishnan; Lydia Chang; Gigi Liu; Daisy Ng; Samuel Cheng; Tommy Tsan-Yuk Lam; Malik Peiris; Matthew McKay
Journal:  Res Sq       Date:  2022-08-11

9.  Hybrid measurement of respiratory aerosol reveals a dominant coarse fraction resulting from speech that remains airborne for minutes.

Authors:  Yang Shen; Joseph M Courtney; Philip Anfinrud; Adriaan Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-21       Impact factor: 12.779
  9 in total

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