Literature DB >> 34699352

Circle Representation for Medical Object Detection.

Ethan H Nguyen, Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Joseph T Roland, Le Lu, Bennett A Landman, Agnes B Fogo, Yuankai Huo.   

Abstract

Box representation has been extensively used for object detection in computer vision. Such representation is efficacious but not necessarily optimized for biomedical objects (e.g., glomeruli), which play an essential role in renal pathology. In this paper, we propose a simple circle representation for medical object detection and introduce CircleNet, an anchor-free detection framework. Compared with the conventional bounding box representation, the proposed bounding circle representation innovates in three-fold: (1) it is optimized for ball-shaped biomedical objects; (2) The circle representation reduced the degree of freedom compared with box representation; (3) It is naturally more rotation invariant. When detecting glomeruli and nuclei on pathological images, the proposed circle representation achieved superior detection performance and be more rotation-invariant, compared with the bounding box. The code has been made publicly available: https://github.com/hrlblab/CircleNet.

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Mesh:

Year:  2022        PMID: 34699352      PMCID: PMC8963364          DOI: 10.1109/TMI.2021.3122835

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  21 in total

1.  Machine vision-based localization of nucleic and cytoplasmic injection sites on low-contrast adherent cells.

Authors:  Hadi Esmaeilsabzali; Kelly Sakaki; Nikolai Dechev; Robert D Burke; Edward J Park
Journal:  Med Biol Eng Comput       Date:  2011-09-27       Impact factor: 2.602

2.  Segmenting clustered nuclei using H-minima transform-based marker extraction and contour parameterization.

Authors:  Chanho Jung; Changick Kim
Journal:  IEEE Trans Biomed Eng       Date:  2010-07-23       Impact factor: 4.538

3.  Measurement of glomerulus diameter and Bowman's space width of renal albino rats.

Authors:  Taras Kotyk; Nilanjan Dey; Amira S Ashour; Dana Balas-Timar; Sayan Chakraborty; Ahmed S Ashour; João Manuel R S Tavares
Journal:  Comput Methods Programs Biomed       Date:  2015-12-19       Impact factor: 5.428

Review 4.  Glomerular number and size variability and risk for kidney disease.

Authors:  Victor G Puelles; Wendy E Hoy; Michael D Hughson; Boucar Diouf; Rebecca N Douglas-Denton; John F Bertram
Journal:  Curr Opin Nephrol Hypertens       Date:  2011-01       Impact factor: 2.894

5.  Mitosis detection in breast cancer histology images with deep neural networks.

Authors:  Dan C Cireşan; Alessandro Giusti; Luca M Gambardella; Jürgen Schmidhuber
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

6.  A Multi-Organ Nucleus Segmentation Challenge.

Authors:  Neeraj Kumar; Ruchika Verma; Deepak Anand; Yanning Zhou; Omer Fahri Onder; Efstratios Tsougenis; Hao Chen; Pheng-Ann Heng; Jiahui Li; Zhiqiang Hu; Yunzhi Wang; Navid Alemi Koohbanani; Mostafa Jahanifar; Neda Zamani Tajeddin; Ali Gooya; Nasir Rajpoot; Xuhua Ren; Sihang Zhou; Qian Wang; Dinggang Shen; Cheng-Kun Yang; Chi-Hung Weng; Wei-Hsiang Yu; Chao-Yuan Yeh; Shuang Yang; Shuoyu Xu; Pak Hei Yeung; Peng Sun; Amirreza Mahbod; Gerald Schaefer; Isabella Ellinger; Rupert Ecker; Orjan Smedby; Chunliang Wang; Benjamin Chidester; That-Vinh Ton; Minh-Triet Tran; Jian Ma; Minh N Do; Simon Graham; Quoc Dang Vu; Jin Tae Kwak; Akshaykumar Gunda; Raviteja Chunduri; Corey Hu; Xiaoyang Zhou; Dariush Lotfi; Reza Safdari; Antanas Kascenas; Alison O'Neil; Dennis Eschweiler; Johannes Stegmaier; Yanping Cui; Baocai Yin; Kailin Chen; Xinmei Tian; Philipp Gruening; Erhardt Barth; Elad Arbel; Itay Remer; Amir Ben-Dor; Ekaterina Sirazitdinova; Matthias Kohl; Stefan Braunewell; Yuexiang Li; Xinpeng Xie; Linlin Shen; Jun Ma; Krishanu Das Baksi; Mohammad Azam Khan; Jaegul Choo; Adrian Colomer; Valery Naranjo; Linmin Pei; Khan M Iftekharuddin; Kaushiki Roy; Debotosh Bhattacharjee; Anibal Pedraza; Maria Gloria Bueno; Sabarinathan Devanathan; Saravanan Radhakrishnan; Praveen Koduganty; Zihan Wu; Guanyu Cai; Xiaojie Liu; Yuqin Wang; Amit Sethi
Journal:  IEEE Trans Med Imaging       Date:  2019-10-23       Impact factor: 10.048

Review 7.  The rise of renal pathology in nephrology: structure illuminates function.

Authors:  Vivette D D'Agati; Michael Mengel
Journal:  Am J Kidney Dis       Date:  2013-02-12       Impact factor: 8.860

Review 8.  AI applications in renal pathology.

Authors:  Yuankai Huo; Ruining Deng; Quan Liu; Agnes B Fogo; Haichun Yang
Journal:  Kidney Int       Date:  2021-02-10       Impact factor: 10.612

9.  Computational Segmentation and Classification of Diabetic Glomerulosclerosis.

Authors:  Brandon Ginley; Brendon Lutnick; Kuang-Yu Jen; Agnes B Fogo; Sanjay Jain; Avi Rosenberg; Vighnesh Walavalkar; Gregory Wilding; John E Tomaszewski; Rabi Yacoub; Giovanni Maria Rossi; Pinaki Sarder
Journal:  J Am Soc Nephrol       Date:  2019-09-05       Impact factor: 14.978

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  1 in total

1.  Glo-In-One: holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining.

Authors:  Tianyuan Yao; Yuzhe Lu; Jun Long; Aadarsh Jha; Zheyu Zhu; Zuhayr Asad; Haichun Yang; Agnes B Fogo; Yuankai Huo
Journal:  J Med Imaging (Bellingham)       Date:  2022-06-20
  1 in total

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