Literature DB >> 34694461

Identification of novel genome-wide pleiotropic associations with oral inflammatory traits.

Yanjiao Jin1,2, Jie Yang3, Shuyue Zhang3, Xuefeng Shi4, Jin Li5,6, Songlin Wang7,8,9.   

Abstract

Oral inflammatory diseases (OIDs) are a group of dental diseases with multiple clinical manifestations that impact the majority of the world's population. Many studies have investigated the associations between individual OID traits and genomic variants, but whether pleiotropic loci are shared by oral inflammatory traits remains poorly understood. Here, we conducted multitrait joint analyses based on the summary statistics of genome-wide association studies (GWASs) of five dental traits from the UK Biobank. Among these genome-wide significant loci, two were novel for both painful gums and toothache. We identified causal variants at each novel locus, and functional annotation based on multiomics data suggested IL10 and IL12A/TRIM59 as potential candidate genes at the novel pleiotropic loci. Subsequent analyses of pathway enrichment and protein-protein interaction networks suggested the involvement of the candidate genes in immune regulation. In conclusion, our results uncover novel pleiotropic loci for OID traits and highlight the importance of immune regulation in the pathogenesis of OIDs. These findings will enhance our understanding of the pathogenesis of OIDs and be beneficial for risk screening, prevention, and the development of novel drugs targeting the immune regulation of OIDs.
© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Genome-wide association studies; Immunity; Inflammation; Multitrait joint analysis; Oral diseases; Pleiotropic loci

Mesh:

Substances:

Year:  2021        PMID: 34694461     DOI: 10.1007/s00438-021-01826-6

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  25 in total

1.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Authors:  Brendan K Bulik-Sullivan; Po-Ru Loh; Hilary K Finucane; Stephan Ripke; Jian Yang; Nick Patterson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-02-02       Impact factor: 38.330

2.  Association of the IL-10 polymorphisms and periodontitis: a meta-analysis.

Authors:  C M Albuquerque; A J Cortinhas; F J Morinha; J C Leitão; C A Viegas; E M Bastos
Journal:  Mol Biol Rep       Date:  2012-07-05       Impact factor: 2.316

3.  MAGMA: generalized gene-set analysis of GWAS data.

Authors:  Christiaan A de Leeuw; Joris M Mooij; Tom Heskes; Danielle Posthuma
Journal:  PLoS Comput Biol       Date:  2015-04-17       Impact factor: 4.475

4.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

5.  The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.

Authors:  Annalisa Buniello; Jacqueline A L MacArthur; Maria Cerezo; Laura W Harris; James Hayhurst; Cinzia Malangone; Aoife McMahon; Joannella Morales; Edward Mountjoy; Elliot Sollis; Daniel Suveges; Olga Vrousgou; Patricia L Whetzel; Ridwan Amode; Jose A Guillen; Harpreet S Riat; Stephen J Trevanion; Peggy Hall; Heather Junkins; Paul Flicek; Tony Burdett; Lucia A Hindorff; Fiona Cunningham; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

6.  Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci.

Authors:  Tom Dudding; Simon Haworth; Penelope A Lind; J Fah Sathirapongsasuti; Joyce Y Tung; Ruth Mitchell; Lucía Colodro-Conde; Sarah E Medland; Scott Gordon; Benjamin Elsworth; Lavinia Paternoster; Paul W Franks; Steven J Thomas; Nicholas G Martin; Nicholas J Timpson
Journal:  Nat Commun       Date:  2019-03-05       Impact factor: 14.919

7.  Exploring the genetic basis of chronic periodontitis: a genome-wide association study.

Authors:  Kimon Divaris; Keri L Monda; Kari E North; Andrew F Olshan; Lindsay M Reynolds; Wen-Chi Hsueh; Ethan M Lange; Kevin Moss; Silvana P Barros; Robert J Weyant; Yongmei Liu; Anne B Newman; James D Beck; Steven Offenbacher
Journal:  Hum Mol Genet       Date:  2013-03-04       Impact factor: 6.150

8.  FINEMAP: efficient variable selection using summary data from genome-wide association studies.

Authors:  Christian Benner; Chris C A Spencer; Aki S Havulinna; Veikko Salomaa; Samuli Ripatti; Matti Pirinen
Journal:  Bioinformatics       Date:  2016-01-14       Impact factor: 6.937

9.  An atlas of genetic correlations across human diseases and traits.

Authors:  Brendan Bulik-Sullivan; Hilary K Finucane; Verneri Anttila; Alexander Gusev; Felix R Day; Po-Ru Loh; Laramie Duncan; John R B Perry; Nick Patterson; Elise B Robinson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-09-28       Impact factor: 38.330

10.  Analysis of macaque BTN3A genes and transcripts in the extended MHC: conserved orthologs of human γδ T cell modulators.

Authors:  Nanine de Groot; Rens Groen; Vaneesha Orie; Jesse Bruijnesteijn; Natasja G de Groot; Gaby G M Doxiadis; Ronald E Bontrop
Journal:  Immunogenetics       Date:  2019-08-05       Impact factor: 2.846

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