Literature DB >> 34692910

En masse DNA Electroporation for in vivo Transcriptional Assay in Ascidian Embryos.

Sébastien Darras1.   

Abstract

Ascidian embryos are powerful models for functional genomics, in particular, due to the ease of generating a large number of transgenic embryos by electroporation. In addition, the small size of their genome makes them an attractive model for studying cis-regulatory elements that control gene expression during embryonic development. Here, I describe the adaptation of the seminal method developed 25 years ago in Ciona robusta for en masse DNA electroporation for in vivo transcription to additional species belonging to three genera. It is likely that similar optimizations would make electroporation successful in other ascidian species, where in vitro fertilization can be performed on a large number of eggs.
Copyright © The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Ascidia; Ascidians; Cis-regulatory DNA ; Electroporation; Molgula; Phallusia; Transgenesis; Tunicates

Year:  2021        PMID: 34692910      PMCID: PMC8481021          DOI: 10.21769/BioProtoc.4160

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  8 in total

1.  Evolutionary crossroads in developmental biology: the tunicates.

Authors:  Patrick Lemaire
Journal:  Development       Date:  2011-06       Impact factor: 6.868

2.  Embryological methods in ascidians: the Villefranche-sur-Mer protocols.

Authors:  Christian Sardet; Alex McDougall; Hitoyoshi Yasuo; Janet Chenevert; Gérard Pruliere; Rémi Dumollard; Clare Hudson; Celine Hebras; Ngan Le Nguyen; Alexandre Paix
Journal:  Methods Mol Biol       Date:  2011

3.  Characterization of a notochord-specific enhancer from the Brachyury promoter region of the ascidian, Ciona intestinalis.

Authors:  J C Corbo; M Levine; R W Zeller
Journal:  Development       Date:  1997-02       Impact factor: 6.868

4.  Conservation of peripheral nervous system formation mechanisms in divergent ascidian embryos.

Authors:  Joshua F Coulcher; Agnès Roure; Rafath Chowdhury; Méryl Robert; Laury Lescat; Aurélie Bouin; Juliana Carvajal Cadavid; Hiroki Nishida; Sébastien Darras
Journal:  Elife       Date:  2020-11-16       Impact factor: 8.140

5.  An otx/nodal regulatory signature for posterior neural development in ascidians.

Authors:  Agnès Roure; Patrick Lemaire; Sébastien Darras
Journal:  PLoS Genet       Date:  2014-08-14       Impact factor: 5.917

6.  Variable levels of drift in tunicate cardiopharyngeal gene regulatory elements.

Authors:  William Colgan; Alexis Leanza; Ariel Hwang; Melissa B DeBiasse; Isabel Llosa; Daniel Rodrigues; Hriju Adhikari; Guillermo Barreto Corona; Saskia Bock; Amanda Carillo-Perez; Meagan Currie; Simone Darkoa-Larbi; Daniel Dellal; Hanna Gutow; Pascha Hokama; Emily Kibby; Noah Linhart; Sophia Moody; Allison Naganuma; Diep Nguyen; Ryan Stanton; Sierra Stark; Cameron Tumey; Anthony Velleca; Joseph F Ryan; Brad Davidson
Journal:  Evodevo       Date:  2019-10-11       Impact factor: 2.250

7.  ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.

Authors:  Justine Dardaillon; Delphine Dauga; Paul Simion; Emmanuel Faure; Takeshi A Onuma; Melissa B DeBiasse; Alexandra Louis; Kazuhiro R Nitta; Magali Naville; Lydia Besnardeau; Wendy Reeves; Kai Wang; Marie Fagotto; Marion Guéroult-Bellone; Shigeki Fujiwara; Rémi Dumollard; Michael Veeman; Jean-Nicolas Volff; Hugues Roest Crollius; Emmanuel Douzery; Joseph F Ryan; Bradley Davidson; Hiroki Nishida; Christelle Dantec; Patrick Lemaire
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

8.  Divergent mechanisms regulate conserved cardiopharyngeal development and gene expression in distantly related ascidians.

Authors:  Alberto Stolfi; Elijah K Lowe; Claudia Racioppi; Filomena Ristoratore; C Titus Brown; Billie J Swalla; Lionel Christiaen
Journal:  Elife       Date:  2014-09-10       Impact factor: 8.140

  8 in total
  1 in total

1.  Highly distinct genetic programs for peripheral nervous system formation in chordates.

Authors:  Rafath Chowdhury; Agnès Roure; Yann le Pétillon; Hélène Mayeur; Vladimir Daric; Sébastien Darras
Journal:  BMC Biol       Date:  2022-06-27       Impact factor: 7.364

  1 in total

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