| Literature DB >> 34689310 |
Frédéric Fitoussi1, Serge Tonen-Wolyec2,3, Natalio Awaida4, Raphaël Dupont1,4, Laurent Bélec5,6.
Abstract
BACKGROUND: The accuracy and reliability of rapid diagnostic tests are critical for monitoring and diagnosing SARS-CoV-2 infection in the general population. This study aimed to evaluate the analytical performance of the BIOSYNEX COVID-19 Ag BSS (Biosynex Swiss SA, Fribourg, Switzerland) antigen rapid diagnostic test (BIOSYNEX Ag-RDT), which targets the SARS-CoV-2 N-nucleocapsid protein for the diagnosis of COVID-19. The Ag-RDT was compared with a real-time RT-PCR (rtRT-PCR) as gold standard for performance measurement.Entities:
Keywords: Antigen; COVID-19; France; Lateral flow assay; N-nucleocapsid protein; Rapid diagnostic test; SARS-CoV-2
Mesh:
Substances:
Year: 2021 PMID: 34689310 PMCID: PMC8542359 DOI: 10.1007/s15010-021-01723-5
Source DB: PubMed Journal: Infection ISSN: 0300-8126 Impact factor: 3.553
Characteristics of persons providing paired upper respiratory swab (n = 967) for real-time reverse transcription-polymerase chain reaction (rtRT-PCR) testing and BIOSYNEX COVID-19 Ag BSS rapid diagnostic testing for SARS-CoV-2 at two private laboratory sites, by test results, Paris, France, spring 2021
| Characteristics | To number of persons (column %) | Number of persons (row%) | |||
|---|---|---|---|---|---|
| rtRT-PCR negative | rtRT-PCR positive | Antigen test negative | Antigen test positive | ||
| Total | 967 (100) | 819 (84.7) | 148 (15.3) | 844 (87.3) | 123 (12.7) |
| Testing site | |||||
| A | 741 (74.6) | 633 (85.4) | 108 (14.6) | 651 (87.9) | 90 (12.1) |
| B | 226 (25.4) | 186 (82.4) | 40 (17.6) | 193 (85.4) | 33 (14.6) |
| Sex | |||||
| Female | 498 (51.5) | 429 (86.2) | 69 (13.8) | 438 (88.0) | 60 (12.0) |
| Male | 469 (48.5) | 390 (83.2) | 79 (16.8) | 406 (86.6) | 63 (13.4) |
| Age group, years | |||||
| 18–49 | 740 (76.4) | 629 (85.0) | 111 (15.0) | 647 (87.4) | 93 (12.6) |
| 50–64 | 157 (16.3) | 129 (82.2) | 28 (17.8) | 133 (84.7) | 24 (15.3) |
| ≥ 65 | 70 (7.3) | 61 (87.1) | 9 (12.9) | 64 (91.4) | 6 (8.6) |
| Median age (range) | 34 (18–83) | 34 (18–83) | 32 (18–82) | 34 (18–83) | 37 (18–82) |
| Any symptoms | |||||
| ≥ 1 | 245 (25.3) | 165 (67.4) | 80 (32.6) | 168 (68.6) | 77 (31.4) |
| None | 722 (74.7) | 654 (90.6) | 68 (9.4) | 676 (93.6) | 46 (6.4) |
| Days from onset of symptoms | |||||
| 0–3 | 107 (43.3) | 38 (35.5) | 69 (64.5) | 41(38.3) | 66 (61.7) |
| 4–7 | 122 (49.8) | 48 (39.4) | 74 (60.6) | 69 (56.6) | 53 (43.4) |
| > 7 | 16 (6.9) | 11 (68.7) | 5 (31.3) | 12 (75.0) | 4 (25.0) |
| Median (range) | 4 (0–20) | 4 (0–20) | 3 (0–15) | 4 (0–20) | 3 (0–10) |
| Air travel intention | |||||
| Yes | 344 (35.6) | 330 (95.9) | 14 (4.1) | 337 (98.0) | 7 (2.0) |
| No | 623 (64.4) | 489 (78.5) | 134 (21.5) | 507 (81.4) | 116 (18.6) |
| Contact case (exposure to a diagnosed COVID-19 case) | |||||
| Yes | 340 (35.1) | 282 (82.9) | 58 (17.1) | 293 (86.2) | 47 (13.8) |
| No/unknown | 627 (64.9) | 537 (85.7) | 90 (14.3) | 551 (87.9) | 76 (12.1) |
| Suspected COVID-19 | |||||
| Yes (≥ 1 COVID-19 symptoms | 212 (21.9) | 149 (70.3) | 63 (29.7) | 151 (71.2) | 61 (28.8) |
| No | 755 (78.1) | 670 (88.8) | 85 (11.2) | 693 (91.8) | 62 (8.2) |
| Preoperative assessment | |||||
| Yes | 42 (4.4) | 38 (90.5) | 4 (9.5) | 40 (95.2) | 2 (2.8) |
| No | 925 (95.6) | 781 (84.4) | 144 (15.6) | 804 (86.9) | 121 (13.1) |
| Control of SARS-CoV-2 positive test results in past 30 days | |||||
| Yes | 29 (3.0) | 20 (68.9) | 9 (31.1) | 21 (72.4) | 8 (27.6) |
| No/unknown | 938 (97.0) | 799 (85.2) | 139 (14.8) | 823 (87.7) | 115 (12.3) |
Test results and performances characteristics of the BIOSYNEX COVID-19 Ag BSS rapid diagnostic test compared with real-time reverse transcription-polymerase chain reaction (rtRT-PCR) for SARS-CoV-2 testing among asymptomatic and symptomatic persons at two private laboratory sites, by test results, Paris, France, spring 2021
| Results and performances | rtRT-PCR (number of test, %) | Total | |
|---|---|---|---|
| Positive | Negative | ||
| BIOSYNEX COVID-19 Ag BSS results | |||
| All participants ( | |||
| Positive | 121 (12.5) | 3 (0.3) | 124 (12.8) |
| Negative | 27 (2.8) | 816 (84.4) | 843 (87.2) |
| Total | 148 (21.2) | 819 (78.8) | 967 (100) |
| Asymptomatic ( | |||
| Positive | 45 (4.2) | 2 (0.3) | 47 (6.5) |
| Negative | 23 (5.2) | 652 (90.3) | 675 (95.5) |
| Total | 68 (9.4) | 654 (90.6) | 722 (100) |
| Symptomatic (≥ 1 symptom) ( | |||
| Positive | 76 (31.0) | 1 (0.4) | 77 (31.4) |
| Negative | 4 (1.6) | 164 (67.0) | 168 (68.6) |
| Total | 80 (32.6) | 165 (67.4) | 245 (100) |
| Symptomatic (≤ 7 days from symptom onset) ( | |||
| Positive | 72 (31.4) | 1 (0.5) | 73 (31.9) |
| Negative | 3 (1.3) | 153 (66.8) | 156 (68.1) |
| Total | 75 (32.7) | 154 (67.3) | 229 (100) |
| All participants | |||
| Sensitivity | 81.8 (79.2–84.1) | ||
| Specificity | 99.6 (98.9–99.8) | ||
| PPV£ | 96.6 (95.3–97.6) | ||
| NPV£ | 97.5 (96.3–98.3) | ||
| Asymptomatic | |||
| Sensitivity | 79.4 (76.3–82.2) | ||
| Specificity | 99.7 (98.9–99.9) | ||
| PPV | 97.3 (95.8–98.2) | ||
| NPV | 97.2 (95.7–98.2) | ||
| Symptomatic | |||
| Sensitivity | 95.6 (92.2–97.5) | ||
| Specificity | 99.3 (97.2–99.8) | ||
| PPV | 95.6 (92.2–97.5) | ||
| NPV | 99.3 (97.2–99.8) | ||
| Symptomatic (≤ 7 days from onset) | |||
| Sensitivity | 96.0 (92.6–97.9) | ||
| Specificity | 99.4 (97.3–99.9) | ||
| PPV | 95.7 (92.2–97.7) | ||
| NPV | 99.4 (97.3–99.9) | ||
CI confidence interval; NVP negative predictive value; PPV positive predictive value
£PPV and NPV were calculated according to the Bayes’s formulae, by taking into account the official reported prevalence of SARS-CoV-2-RNA positivity in COVID-19-suspected patients in Paris’s area, France, of 12.2% on 12th April 2021 [Santé publique France 2021; https://www.santepubliquefrance.fr/]
Analytical performances of the BIOSYNEX COVID-19 Ag BSS rapid diagnostic test for the qualitative detection of the N protein of SARS-CoV-2 using 967 prospectively collected nasopharyngeal swab samples by reference rtRT-PCR, according to their N gene Ct values
| N gene Ct (median; range) | BIOSYNEX COVID-19 Ag BSS§ | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| FN ( | TP ( | Sensitivitya (% [95% CI])µ | Specificitya (% [95% CI]) | Agreementb | Concordancec | Youden’s J indexd | PPVe% [95% CI]) | NPVe (% [95% CI]) | ||||
| Detectable N gene Ct£ by rtRT-PCR# | ≤ 20 | 17.9 (13.9–20.0) | 35 | 0 | 35 | 100 (99.6–100) | 99.6 (98.9–99.8) | 99.6 (98.9–99.8) | 0.95 (0.93–0.96) | 99.6 (98.9–99.8)) | 97.2 (95.9–98.1) | 100 (99.6–100) |
| 21–33 | 27.2 (20.1–33.0) | 84 | 14 | 70 | 83.3 (80.7–85.6) | 99.6 (98.9–99.8) | 98.1 (97.0–98.8) | 0.65 (0.62–0.68) | 82.9 (80.3–85.2) | 96.7 (95.3–97.7) | 97.7 (96.5–98.5) | |
| > 33–41 | 35.9 (34.0–39.2) | 29 | 13 | 16 | 55.2 (51.8–58.5) | 99.6 (98.9–99.8) | 98.1 (96.9–98.8) | 0.65 (0.62–0.68) | 54.8 (51.4–58.1) | 95.0 (93.3–96.3) | 94.1 (92.3–95.5) | |
| All positive Ct values | 26.9 (13.9–39.2) | 148 | 27 | 121 | 81.8 (79.2–84.1) | 99.6 (98.9–99.8) | 96.9 (95.9–97.8) | 0.87 (0.85–0.89) | 81.4 (78.8–83.7) | 96.6 (95.3–97.6) | 97.5 (96.3–98.3) | |
C cycle threshold; FN false negative; NPV negative predictive value; PPV positive predictive value; rtRT-PCR real-time reverse transcription-polymerase chain reaction; TP True positive
§Paired nasopharyngeal samples in each nostril were collected with a flocked swab for each volunteer patients by trained healthcare personnel (nurses, doctors or biologists). The collection of the two simultaneous samples was always carried out by the same operator. Molecular testing as well COVID-19 antigen detection was carried out on fresh samples.
aThe results of SARS-CoV-2 RNA detection using the multiplex rtRT-PCR were used as the reference standard to estimate the sensitivity and specificity of the study Ag-RDT, with corresponding 95% CI.
bAgreement = TP + TN/TP + FP + TN + FN, expressed in percentage.
cThe Cohen’s κ coefficient calculation was used to estimate the concordance [43] and interpreted according the Landis and Koch scale [44], as follows: < 0 as indicating no agreement, 0–0.20 as slight, 0.21–0.40 as fair, 0.41–0.60 as moderate, 0.61–0.80 as substantial, and 0.81–1 as almost perfect concordance.
dThe accuracy of the test BIOSYNEX COVID-19 Ag BSS to correctly diagnose SARS-CoV-2 infection was estimated by Youden’s J index (J = sensitivity + specificity − 1) [45].
ePPV and NPV were calculated according to the Bayes’s formulae, by taking into account the official reported prevalence of SARS-CoV-2-RNA positivity in COVID-19-suspected patients in Paris’s area, France, of 12.2% on 12th April 2021 [Santé publique France 2021; https://www.santepubliquefrance.fr/].
µ95% confidence intervals in brackets were calculated using the Wilson score bounds.
£The Ct values of N gene detection by the reference Liferiver rtRT-PCR were used to classify nasopharyngeal samples according to their level of SARS-CoV-2 RNA excretion; Ct of 20 and 33 were taken as thresholds of very high and high SARS-CoV-2 RNA excretion, respectively, as previously stated [36, 39, 40, 41] ; viral loads with Ct > 33 are considered low and correspond to moderate or very low viral excretion [36, 39–41]. Conversely, samples with Ct ≤ 33 have a significant SARS-CoV-2 viral load, as in individuals symptomatic for COVID-19 or contagious. Ct values ≤ 20 indicate very high viral shedding [39–41]
The CE IVD-marked Novel Coronavirus (2019-nCoV) Real-Time Multiplex RT-PCR Kit (Detection for 3 Genes) (Liferiver & Shanghai ZJ Bio-Tech Co., Ltd, Shanghai, China) constituted the reference multiplex rtRT-PCR for SARS-CoV-2 RNA detection. This assay can detect three coronavirus target genes simultaneously, including the SARS-like (SARS-CoV-2, SARS-CoV, bat SARS-like coronavirus) conserved region of envelope protein gene (E), RNA-dependent RNA polymerase gene (ORF1ab of RdRP gene), and nucleocapsid protein gene (N), using reverse transcription. Nucleic acid extraction was performed from 300 μL elution volume of a nasopharyngeal flocked swab sample, using an EX3600 extractor (Liferiver & Shanghai ZJ Bio-Tech Co.), according to the manufacturer’s instructions, and finally eluted in 50 μL (final volume). SARS-CoV-2 was detected in 5 μL of extracted RNA. Real-time PCR was conducted using CFX96™ Real-Time PCR Detection System (Bio-Rad Laboratories, Hercules, CA, USA) according to the manufacturer’s instructions. The experiment and analysis of the results were performed according to the manufacturer’s protocol.