| Literature DB >> 34680043 |
Yuriy A Knirel1, Andrey P Anisimov2, Angelina A Kislichkina2, Anna N Kondakova1, Olga V Bystrova1, Anastasia S Vagaiskaya2, Konstantin Y Shatalin3, Alexander S Shashkov1, Svetlana V Dentovskaya2.
Abstract
Lipopolysaccharide (LPS), localized in the outer leaflet of the outer membrane, serves as the major surface component of the Gram-negative bacterial cell envelope responsible for the activation of the host's innate immune system. Variations of the LPS structure utilized by Gram-negative bacteria promote survival by providing resistance to components of the innate immune system and preventing recognition by TLR4. This review summarizes studies of the biosynthesis of Yersinia pseudotuberculosis complex LPSs, and the roles of their structural components in molecular mechanisms of yersiniae pathogenesis and immunogenesis.Entities:
Keywords: Yersinia pestis; Yersinia pseudotuberculosis; core; lipid A; lipopolysaccharide (LPS); pathogenesis; pathogenicity factor; plague
Mesh:
Substances:
Year: 2021 PMID: 34680043 PMCID: PMC8533242 DOI: 10.3390/biom11101410
Source DB: PubMed Journal: Biomolecules ISSN: 2218-273X
Structures of the O-specific polysaccharides of Y. pseudotuberculosis.
| Serotype [Reference] | Structure of the Repeating Unit |
|---|---|
| O1a R = β-Par |
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| O1c R = β-Par |
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| O3 [ |
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| O2c R = α-Abe |
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| O1b R = β-Par |
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| O5a R = α-Asc |
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| O6 [ |
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| O7 [ |
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| O10 [ |
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| O12 [ |
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| O9 [ |
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Structures of the core oligosaccharides of Y. pseudotuberculosis/Y. pestis cultivated at various temperatures. Substituents present in non-stoichiometric amounts are indicated in italics.
| Species, Growth Temperature [Reference] | Major Structure |
|---|---|
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Figure 1Structures of hexaacyl (A), pentaacyl (B) and tetraacyl (C,D) lipid A species of Y. pestis and Y. pseudotuberculosis. In tetraacyl lipid A of Y. pestis (C,D), Ara4N is present in a non-stoichiometric amount at 37° or completely absent at 6 °C, respectively.
Homologues of Y. pestis lipid A biosynthesis and structural modification genes found in the Y. pseudotuberculosis/E. coli genomes. Sequence conservation relates to alignments with the Y. pseudotuberculosis IP 32953 and E. coli K-12 sequences.
| Gene | Related Proteins | Proposed Function |
|---|---|---|
| Biosynthesis | ||
| 100% | UDP-N-acetylglucosamine acetyltransferase | |
| 100% | UDP-3-O-acyl-N-acetylglucosamine deacetylase | |
| 100% | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | |
| 100% | UDP-2,3-diacylglucosamine diphosphatase | |
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| 100% | Lipid A disaccharide synthase |
| 100% | Tetraacyldisaccharide 4′-kinase | |
| 100% | Kdo transferase | |
| 100% | Lauroyl acyltransferase | |
| 100% | Palmitoleoyl acyltransferase | |
| Structural Modification | ||
| 100% | Palmitoyltransferase acyltransferase | |
| 100% | Lipid IVA 4-amino-4-deoxy-L-arabinosyltransferase | |
| 99% | Kdo2-lipid A phosphotransferase | |
Homologues of Y. pestis core OS biosynthesis genes found in the Y. pseudotuberculosis/E. coli genomes. Sequence conservation relates to alignments with the Y. pseudotuberculosis IP 32953 and E. coli K-12 sequences [35,48,49,50].
| Gene | Related Proteins | Proposed Function |
|---|---|---|
| CORE BIOSYNTHESIS GENE CLUSTER | ||
| 100% | ADP- | |
| 99% | Heptosyltransferase (HepI) | |
| 100% | Heptosyltransferase (HepII) | |
| 100% | Kdo-transferase (KdoI, KdoII) | |
| 100% | Glycosyltransferase (Glc) | |
| CORE BIOSYNTHESIS GENE CLUSTER | ||
| 99% | Heptosyltransferase (HepIV) | |
| 99% | Glycosyltransferase (Gal) | |
| CORE BIOSYNTHESIS GENE CLUSTER | ||
| 99% | Heptosyltransferase (HepIII) | |
| 100% | O-antigen ligase | |
| structural modification | ||
| 99% | Kdo2-lipid A phosphoethanolamine 7″-transferase | |
| 99% | Kdo-3-hydroxylase | |
Figure 2Schematic genomic tree and divergence based on core SNP analysis of 61 Y. pestis Genome Assembly and Annotation reports (https://www.ncbi.nlm.nih.gov/genome/browse/#!/prokaryotes/153/, accessed on 23 September 2021). The relationship among subspecies, biovars and SNP types is shown by Kislichkina [52].
Figure 3Biological properties of wild-type Y. pestis strain 231 and derived LPS mutants. (A) Key to LPS moieties. (B) LPS core structures of Y. pestis 231 and its isogenic mutants. Data are a summary of previous work on LPS of Y. pestis 231 [35] LA and wild-type lipid A; when both are present, dd-HepIV and Gal alternate at the non-reducing end. In all strains, terminal Ko is partially replaced with terminal Kdo. Significant changes in biological properties are indicated in bold face. MIC, minimal inhibitory concentration; cfu, colony forming unit; /20Ψ, MIC at 6 °C; n.d., not determined; Fib, fibrinolytic activity; a positive fibrinolysis test “++” was represented by complete clot lysis; a positive test “+” was represented by any degree of lysis; a negative test “−” was represented by a solid clot; CoA, coagulase activity; a positive coagulase test “++” was represented by a solid clot; a positive test “+” was represented by any degree of incomplete clotting (from a loose clot to a solid clot in liquid plasma); a negative test “−” was represented by the absence of clotting.
Components of the Y. pestis LPS as a specific receptor for bacteriophages.
| Group | Bacteriophage | Receptor | References |
|---|---|---|---|
| T7 | PhiA1122 | Kdo/Ko of LPS | [ |
| YpP-Y | Hep(I)/Glc of LPS | [ | |
| YpP-R | Beyond the LPS core | [ | |
| Yep-phi | LPS; OmpF; Ail | [ | |
| Pokrovskaya (Yepe2,YpP-G) | Hep(II)/Hep(III) of LPS | [ | |
| T7Yp | Hep(I)/Glc of LPS | [ | |
| P2 | L-413C | GlcNAc of LPS | [ |
| P2 | GlcNAc of LPS | [ | |
| T4 | PhiJA1 | Kdo/Ko of LPS | [ |
| YpsP-PST | Hep(II)/Hep(III) of LPS | [ |