Literature DB >> 34678481

A review on omics-based biomarkers discovery for Alzheimer's disease from the bioinformatics perspectives: Statistical approach vs machine learning approach.

Mei Sze Tan1, Phaik-Leng Cheah2, Ai-Vyrn Chin3, Lai-Meng Looi2, Siow-Wee Chang4.   

Abstract

Alzheimer's Disease (AD) is a neurodegenerative disease that affects cognition and is the most common cause of dementia in the elderly. As the number of elderly individuals increases globally, the incidence and prevalence of AD are expected to increase. At present, AD is diagnosed clinically, according to accepted criteria. The essential elements in the diagnosis of AD include a patients history, a physical examination and neuropsychological testing, in addition to appropriate investigations such as neuroimaging. The omics-based approach is an emerging field of study that may not only aid in the diagnosis of AD but also facilitate the exploration of factors that influence the development of the disease. Omics techniques, including genomics, transcriptomics, proteomics and metabolomics, may reveal the pathways that lead to neuronal death and identify biomolecular markers associated with AD. This will further facilitate an understanding of AD neuropathology. In this review, omics-based approaches that were implemented in studies on AD were assessed from a bioinformatics perspective. Current state-of-the-art statistical and machine learning approaches used in the single omics analysis of AD were compared based on correlations of variants, differential expression, functional analysis and network analysis. This was followed by a review of the approaches used in the integration and analysis of multi-omics of AD. The strengths and limitations of multi-omics analysis methods were explored and the issues and challenges associated with omics studies of AD were highlighted. Lastly, future studies in this area of research were justified.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Alzheimer's disease; Biomarkers; Deep learning; Machine learning; Multi-omics; Omics; Statistical analysis

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Year:  2021        PMID: 34678481     DOI: 10.1016/j.compbiomed.2021.104947

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  3 in total

Review 1.  Machine Learning Approaches for Measuring Neighborhood Environments in Epidemiologic Studies.

Authors:  Andrew G Rundle; Michael D M Bader; Stephen J Mooney
Journal:  Curr Epidemiol Rep       Date:  2022-06-30

2.  Lights and Shadows of Cerebrospinal Fluid Biomarkers in the Current Alzheimer's Disease Framework.

Authors:  Maurizio Gallucci; Leandro Cenesi; Céline White; Piero Antuono; Gianluca Quaglio; Laura Bonanni
Journal:  J Alzheimers Dis       Date:  2022       Impact factor: 4.160

3.  Dietary Alterations in Impaired Mitochondrial Dynamics Due to Neurodegeneration.

Authors:  Ghulam Md Ashraf; Stylianos Chatzichronis; Athanasios Alexiou; Gazala Firdousi; Mohammad Amjad Kamal; Magdah Ganash
Journal:  Front Aging Neurosci       Date:  2022-07-11       Impact factor: 5.702

  3 in total

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