COVID-19, HIV-Associated Cryptococcal Meningitis, Disseminated Tuberculosis and Acute Ischaemic Stroke: A Fatal Foursome.

BACKGROUND: Several viral, bacterial and fungal co-infections have been associated with increased morbidity and mortality among patients with COVID-19. We report a fatal case of severe COVID-19 pneumonia in a patient with a recent diagnosis of advanced HIV disease complicated by cryptococcal meningitis, disseminated tuberculosis and acute ischemic stroke. CASE
PRESENTATION: A 37-year-old Ugandan woman was diagnosed with HIV infection 8 days prior to her referral to our center. She was antiretroviral naïve. Her chief complaints were worsening cough, difficulty in breathing, fever and altered mental status for 3 days with a background of a 1-month history of coughing with associated drenching night sweats and weight loss. The reverse transcriptase-polymerase chain reaction for SARS-CoV-2 of her nasopharyngeal swab sample was positive. Chest radiograph demonstrated military pattern involvement of both lungs. The serum and cerebrospinal fluid cryptococcal antigen tests were positive. Urine lipoarabinomannan and sputum GeneXpert were positive for Mycobacterium tuberculosis. Computed tomography of the brain showed a large acute ischemic infarct in the territory of the right middle cerebral artery. Regardless of the initiation of treatment, that is, fluconazole 1200 mg once daily, enoxaparin 60 mg, intravenous (IV) dexamethasone 6 mg once daily, oral fluconazole 1200 mg once daily, IV piperacillin/tazobactam 4.5 g three times daily and oxygen therapy, the patient passed on within 36 hours of admission.
CONCLUSION: Co-infections worsen COVID-19 outcomes.

Background

Respiratory fungal and bacterial infections occur as co-infections or a complication (superinfection) of the coronavirus disease - 2019 (COVID-19).1–3 At least 19% and 24% of people with COVID-19 have a co-infection or superinfection, respectively, which increase the risk of mortality by three-fold.4 Fungal co-infections and bacterial-fungal co-infections are frequently seen in patients with severe COVID-19, and are associated with substantial co-morbidity and mortality.3

In sub-Saharan Africa, tuberculosis (TB) and cryptococcal meningitis (CM) are the most common cause of HIV-related deaths.5,6 In Uganda, in addition to TB and CM being the most common cause of morbidity and mortality among persons with advanced HIV disease,7 up to 14% of patients with CM have active TB with an associated increased mortality among TB-CM co-infected individuals.8

Reports on triple co-infection of HIV, severe acute respiratory syndrome coronavirus−2 (SARS-CoV-2) and Mycobacterium tuberculosis are few and current reports do not suggest that the triple infection worsens outcomes.9 Herein, we describe a fatal case of COVID-19 pneumonia in a patient with HIV-associated cryptococcal meningitis, ischemic stroke and disseminated tuberculosis. In addition, we searched PubMed and Google scholar to identify additional cases of fungal and tuberculosis co-infections in patients with COVID-19.

Case Presentation

A 37-year-old nulliparous woman with a past medical history of a recent diagnosis of HIV infection not on anti-retroviral therapy was admitted at the Mulago National Referral Hospital (MNRH) COVID-19 Treatment Unit (CTU), Uganda with a 3-day history of worsening cough and difficulty in breathing. She had had a productive cough with mucoid sputum accompanied by evening fevers and weight loss of a 2-month duration. On the referral note, there was also a documented history of anosmia, high-grade intermittent fevers, headaches, altered mentation, an episode of loss of consciousness and myalgias for a duration of 5 days. Four days prior to referral to MNRH CTU from a general hospital, her nasopharyngeal swab for SARS-CoV-2 was positive on both reverse transcriptase–polymerase chain reaction (RT-PCR) and rapid antigen tests. She had tested positive for HIV infection 8 days prior to admission and was not undergoing anti-retroviral therapy or cotrimoxazole prophylaxis.

On presentation (day 0), she was critically ill, febrile with an axillary temperature of 38.5 °C, a tachycardia of 168 beats per minute, tachypnoea of 32 breaths per minute, random blood sugar of 8.7 mmol/L, blood pressure of 132/76 mmHg and was hypoxic with a saturation ranging between 85–90% on 5 liters per minute via a nasal prong. Respiratory examination revealed nasal flaring, with intercostal recessions. There were widespread, bilateral, coarse crepitations. She was restless with a Glasgow coma scale of 8/15 (eye opening 3, best verbal response 2 and best motor response 3). Her neck was stiff, with a positive Kernig’s sign. Other systems were unremarkable.

Her serum and cerebrospinal fluid cryptococcal antigen (CrAg) (Immy Inc., Norman, OK) tests were positive (Figure 1). A blood smear was negative for Plasmodium and other haemoparasites. Complete blood count revealed a white blood cell count of 11.8 x 103/µL, with a neutrophilia of 10.8 (91.6%) and a lymphopenia of 0.53 (4.5%). She had a microcytic anemia with hemoglobin level of 8.5 g/dl and mean corpuscular volume of 67fL. Her platelet levels were normal at 300 x103/µL. Renal and liver biochemistry were within limits. Her blood group was B rhesus D positive. The urine lipoarabinomannan (LAM) was positive (Grade II) (Figure 1). Chest radiography revealed features of miliary tuberculosis with background ground glass opacities (Figure 2). Unenhanced computed tomography of the brain demonstrated a right sided large geographic area of hypodensity (19–25 HU) involving the right frontoparietotemporal cortex in the territory of the right middle cerebral artery with an associated hyperdense middle cerebral artery sign (Figure 3A and B). Sputum and blood samples were taken off for GeneXpert and cultures, respectively. The GeneXpert was positive without rifampicin resistance. Anaerobic, aerobic, fungal and mycobacterial cultures were negative. CD4+ T-cell count was 32 cell/microliter and HIV RNA viral load was unknown. Her urine human chorionic gonadotrophin was negative.

Figure 1

LAM TB (upper) and cryptococcal antigen test (lower) results.

Figure 2

Anteroposterior chest radiography demonstrated diffuse reticulonodular opacities (nodular> reticular) involving the bilateral hemithorax with background ground glass haziness.

Figure 3

Unenhanced computed tomography of brain, (A) axial image at the level of anterior horns of the lateral ventricles demonstrating a large geographic area of hypodensity involving the right frontopareitotemporal cortex. (B) axial image at the level of circle of Wills demonstrating hyperdense middle cerebral artery sign (white arrow) of the M1 segment of the right middle cerebral artery.

A diagnosis of severe COVID-19 in the background of advanced HIV infection with complications of CM, disseminated tuberculosis and microcytic anemia was made. She was initiated on intravenous dexamethasone at a dose of 6 mg once daily, subcutaneous enoxaparin 60 mg once daily, intravenous paracetamol 1 g three times a day, cotrimoxazole 960 mg once daily, oral fluconazole 1200 mg once daily and intravenous piperacillin/tazobactam 4.5 g three times daily. Also, 300 mg of aspirin was administered as a STAT dose followed by 75 mg once daily. Anti-TB drugs were not available at the CTU and were being sought from the TB treatment unit. On day +1, a nasogastric tube was passed for feeding and urethral catheter was passed to monitor urine output.

Despite an escalation of oxygen delivery via non-rebreather mask (at 15 L per minute), and later high-flow nasal cannula (at 50 liters per minute), the patient continued to deteriorate with an increasing oxygen requirement and worsening hypoxemia. She passed on within 36 hours of hospitalization, as we were looking for intensive care unit space for assisted ventilation.

Discussion

The burden of AIDS-defining illnesses, particularly TB and CM are high in sub-Saharan African countries with an estimated rate ranging from 16% to 29%.10 Our patient had evidence of both CM and disseminated TB, which are the two most common causes of AIDS-related deaths in sub-Saharan Africa. The most unusual presentation in this patient was the occurrence of these two life-threatening opportunistic infections in association with two other equally lethal conditions – severe COVID-19 pneumonia and acute ischemic stroke. These explain the fatality observed in this patient confronted with a quartet of life-threatening conditions. The ischemic stroke could also be a sequel of CM, SARS-CoV-2 or tuberculous meningitis. In a large cohort of southern Africans with COVID-19, 9.1% had HIV and 3.6% had tuberculosis.11 In this cohort, HIV patients not on anti-retroviral therapy were more likely to die. This observation has also been reported in a patient from Ethiopia who had a COVID-19-HIV-tuberculosis triple infection.12 The patient was on antiretroviral therapy for over three years and survived COVID-19 after hospitalization for over 10 days.

Since COVID-19 hit the world in December 2019, several reports on respiratory co-infection with different bacterial (including TB), viral (influenza and other viruses) and fungal (Cryptococcus, Histoplasma, Aspergillus and others) infections have been reported.3 The prevalence of TB has been reported to be higher in patients with severe COVID-19 than those with non-severe disease. A study from China reported on overall prevalence to range between 0.47 to 4.47%.13 Results of a cohort study from European countries showed that COVID-19 can present simultaneously, before or after the diagnosis of TB. However, the cohort also left some unanswered question regarding the role of COVID-19 in TB re-activation, the role of TB in COVID-19 pathogenesis and outcomes of co-infections.14,15 Our patient likely had pre-existing, undiagnosed TB, given her 1-month history of cough and the associated B-symptoms. TB is associated with extensive parenchymal lung damage. This probably explains the rapid progression of the respiratory symptoms in our patient.

On the other hand, there are few reports of COVID-19 and fungal co-infection in the literature.16 In China, fungal co-infection was reported in up to about 6% of patients with COVID-19.17,18 The most common fungal etiologies associated with COVID-19 in the above studies were C. albicans, A. flavus, and A. fumigatus.16,19 There have been two recent cases of COVID-19–CM co-infections.20 HIV-associated CM is the most common cause of meningitis, accounting for 15–20% of AIDS-related deaths globally and Cryptococcus is the most common etiology of adult meningitis in sub-Saharan Africa.21 Clinically, our patient had advanced HIV disease which was immunologically confirmed by the low CD4+ T-cell count.

The relationship between COVID-19 infection and cerebrovascular disease is poorly understood.22 However, previous studies have demonstrated an association between an increased severity and mortality of COVID-19 with a previous history of stroke.23 In a recent systematic review and meta-analysis of over 100,000 patients with COVID-19, 1.4% developed a cerebrovascular accident in which 87.4% were acute ischemic stroke and the rest hemorrhagic stroke.22 The most important predictors of stroke in these patients were advanced age, pre-existing vascular risk factors and severe COVID-19 illness.22 However, compared with patients without COVID-19, COVID-19 patients who developed stroke were younger and suffered large vessel occlusion.22 Consistent with the above meta-analysis, our patient was younger and sustained right middle cerebral artery occlusion. This case report also highlights the uncertainty surrounding the risk and management of ischemic stroke in patients with COVID-19 pneumonia who are already receiving anticoagulant therapy.24

The concurrent management of disseminated TB, CM, COVID-19 and cerebrovascular disease in a patient immunocompromised by HIV is expectedly complex with no standardized guidelines. The potential for drug-drug interaction and adverse events is anticipated in this scenario. For example, in this patient, rifampicin would induce the cytochrome systems significantly reducing plasma levels of fluconazole.

Conclusion

COVID-19, disseminated TB, CM and acute ischemic stroke quadruple co-morbidities in the background of HIV infection have been reported previously. Disease progression was rapid with fatal consequences. This case reminds clinicians to always suspect and investigate for additional opportunistic infections in the presence of one in the setting of advanced HIV disease.