Simone Marini1,2, Carla Mavian2,3, Alberto Riva4, Marco Salemi2,3, Brittany Rife Magalis2,3. 1. Department of Epidemiology, University of Florida, Gainesville, 32611, FL, USA. 2. Emerging Pathogens Institute, University of Florida, Gainesville, 32611, FL, USA. 3. Department of Pathology, University of Florida, Gainesville, 32611, FL, USA. 4. Bioinformatics Core, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, 32611, FL, USA.
Abstract
SUMMARY: TARDiS is a novel phylogenetic tool for optimal genetic subsampling. It optimizes both genetic diversity and temporal distribution through a genetic algorithm. AVAILABILITY AND IMPLEMENTATION: TARDiS, along with example data sets and a user manual, is available at https://github.com/smarini/tardis-phylogenetics.
SUMMARY: TARDiS is a novel phylogenetic tool for optimal genetic subsampling. It optimizes both genetic diversity and temporal distribution through a genetic algorithm. AVAILABILITY AND IMPLEMENTATION: TARDiS, along with example data sets and a user manual, is available at https://github.com/smarini/tardis-phylogenetics.
Authors: Simon D W Frost; Oliver G Pybus; Julia R Gog; Cecile Viboud; Sebastian Bonhoeffer; Trevor Bedford Journal: Epidemics Date: 2014-09-16 Impact factor: 4.396
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Authors: Carla Mavian; Taylor K Paisie; Meer T Alam; Cameron Browne; Valery Madsen Beau De Rochars; Stefano Nembrini; Melanie N Cash; Eric J Nelson; Taj Azarian; Afsar Ali; J Glenn Morris; Marco Salemi Journal: Proc Natl Acad Sci U S A Date: 2020-03-30 Impact factor: 11.205
Authors: Mario Stevenson; Carla Mavian; Chynna M Hendricks; Melanie N Cash; Massimiliano S Tagliamonte; Alberto Riva; Christian Brander; Anuska Llano; Marco Salemi Journal: Microbiol Spectr Date: 2022-06-14