Literature DB >> 34671173

Modeling zebrafish geotaxis as a feedback control process.

Daniel A Burbano-L1, Maurizio Porfiri1.   

Abstract

Developing mathematical models of the feedback control process underlying animal behavior is of critical importance to understand their interactions with the environment and emotional responses. For instance, fish geotaxis (the tendency to swim at the bottom of the tank) is known to be a highly sensitive measure of anxiety, but how and why animals tend to display such a complex response is yet to be fully clarified. Leveraging the theory of stochastic differential equations, we develop a data-driven model of geotaxis in the form of a feedback control loop where fish use information about the hydrostatic pressure to dive towards the bottom of the tank. The proposed framework extends open-loop models by incorporating a simple, yet effective, control mechanism to explain geotaxis. We focus on the zebrafish animal model, which is a species of choice in the study of anxiety disorders. We calibrate the model using available experimental data on acute ethanol treatment of adult zebrafish, and demonstrate its effectiveness across a wide range of comparisons between theoretical predictions and empirical observations.

Entities:  

Year:  2021        PMID: 34671173      PMCID: PMC8522050          DOI: 10.23919/acc50511.2021.9483149

Source DB:  PubMed          Journal:  Proc Am Control Conf        ISSN: 0743-1619


  21 in total

1.  A jump persistent turning walker to model zebrafish locomotion.

Authors:  Violet Mwaffo; Ross P Anderson; Sachit Butail; Maurizio Porfiri
Journal:  J R Soc Interface       Date:  2015-01-06       Impact factor: 4.118

Review 2.  The neural basis of behavior: a neuroethological view.

Authors:  W Heiligenberg
Journal:  Annu Rev Neurosci       Date:  1991       Impact factor: 12.449

3.  Collective response to perturbations in a data-driven fish school model.

Authors:  Daniel S Calovi; Ugo Lopez; Paul Schuhmacher; Hugues Chaté; Clément Sire; Guy Theraulaz
Journal:  J R Soc Interface       Date:  2015-03-06       Impact factor: 4.118

4.  Zebrafish Behavior in Novel Environments: Effects of Acute Exposure to Anxiolytic Compounds and Choice of Danio rerio Line.

Authors:  James Sackerman; Jennifer J Donegan; Colin S Cunningham; Ngoc Nhung Nguyen; Kelly Lawless; Adam Long; Robert H Benno; Georgianna G Gould
Journal:  Int J Comp Psychol       Date:  2010-01-01

Review 5.  Towards a comprehensive catalog of zebrafish behavior 1.0 and beyond.

Authors:  Allan V Kalueff; Michael Gebhardt; Adam Michael Stewart; Jonathan M Cachat; Mallorie Brimmer; Jonathan S Chawla; Cassandra Craddock; Evan J Kyzar; Andrew Roth; Samuel Landsman; Siddharth Gaikwad; Kyle Robinson; Erik Baatrup; Keith Tierney; Angela Shamchuk; William Norton; Noam Miller; Teresa Nicolson; Oliver Braubach; Charles P Gilman; Julian Pittman; Denis B Rosemberg; Robert Gerlai; David Echevarria; Elisabeth Lamb; Stephan C F Neuhauss; Wei Weng; Laure Bally-Cuif; Henning Schneider
Journal:  Zebrafish       Date:  2013-03       Impact factor: 1.985

Review 6.  Zebrafish as a model system for studying neuronal circuits and behavior.

Authors:  J R Fetcho; K S Liu
Journal:  Ann N Y Acad Sci       Date:  1998-11-16       Impact factor: 5.691

7.  Modulatory neurotransmitter systems and behavior: towards zebrafish models of neurodegenerative diseases.

Authors:  Pertti Panula; Ville Sallinen; Maria Sundvik; Juha Kolehmainen; Veera Torkko; Anu Tiittula; Maxim Moshnyakov; Piotr Podlasz
Journal:  Zebrafish       Date:  2006       Impact factor: 1.985

8.  Analyzing habituation responses to novelty in zebrafish (Danio rerio).

Authors:  Keith Wong; Marco Elegante; Brett Bartels; Salem Elkhayat; David Tien; Sudipta Roy; Jason Goodspeed; Chris Suciu; Julia Tan; Chelsea Grimes; Amanda Chung; Michael Rosenberg; Siddharth Gaikwad; Ashley Denmark; Andrew Jackson; Ferdous Kadri; Kyung Min Chung; Adam Stewart; Tom Gilder; Esther Beeson; Ivan Zapolsky; Nadine Wu; Jonathan Cachat; Allan V Kalueff
Journal:  Behav Brain Res       Date:  2009-12-23       Impact factor: 3.332

9.  A stochastic vision-based model inspired by zebrafish collective behaviour in heterogeneous environments.

Authors:  Bertrand Collignon; Axel Séguret; José Halloy
Journal:  R Soc Open Sci       Date:  2016-01-13       Impact factor: 2.963

10.  Disentangling and modeling interactions in fish with burst-and-coast swimming reveal distinct alignment and attraction behaviors.

Authors:  Daniel S Calovi; Alexandra Litchinko; Valentin Lecheval; Ugo Lopez; Alfonso Pérez Escudero; Hugues Chaté; Clément Sire; Guy Theraulaz
Journal:  PLoS Comput Biol       Date:  2018-01-11       Impact factor: 4.475

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  1 in total

1.  Vitamin C Mitigates Oxidative Stress and Behavioral Impairments Induced by Deltamethrin and Lead Toxicity in Zebrafish.

Authors:  Emanuela Paduraru; Elena-Iuliana Flocea; Carlo C Lazado; Ira-Adeline Simionov; Mircea Nicoara; Alin Ciobica; Caterina Faggio; Roxana Jijie
Journal:  Int J Mol Sci       Date:  2021-11-24       Impact factor: 5.923

  1 in total

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