Literature DB >> 34669056

Linc-ROR has a Potential ceRNA Activity for OCT4A by Sequestering miR-335-5p in the HEK293T Cell Line.

Elham Taheri Bajgan1, Akram Gholipour2, Mohammadali Faghihi3, Seyed Javad Mowla1, Mahshid Malakootian4.   

Abstract

Linc-ROR has a regulatory role in reprogramming, and the core stem cell transcription factors, OCT4, SOX2, and NANOG, regulate its expression. MicroRNAs (miRNAs) are also a critical constituent of pivotal posttranscriptional regulatory pathways. One of such interactions is a competing endogenous RNA interaction that connects small and long non-coding RNAs with coding transcripts. Here, we aimed to investigate the existence of such associations between OCT4A, Linc-ROR, hsa-miR-335-5p, and hsa-miR-544. Bioinformatic analysis was performed to evaluate the expression status of OCT4A, Linc-ROR, miR-335, and miR-544 throughout differentiation as well as in various differentiated cells. The complete lengths of OCT4A and Linc-ROR, and OCT4A 3'-UTR were cloned in the luciferase reporter vector, and the precursors of miR-335 and miR-544 were cloned in expression vectors. Following the overexpression of miR-335 and miR-544 in the 5637 cell line, the endogenous expression of OCT4A and Linc-ROR was evaluated. Afterward, the expression vectors of miRNAs and the reporter vectors of OCT4A/Linc-ROR were co-transfected in the HEK293T cell line. Via the Dual-Luciferase assay, the effect of the overexpression of miRNAs on their two possible targets (Linc-ROR and OCT4A) was investigated. The bioinformatic analysis demonstrated a relatively similar expression pattern for OCT4A and Linc-ROR, while miR-335 showed a different expression status. Both miR-335 and miR-544 inhibited the endogenous expression of OCT4A. The Dual-Luciferase assay likewise confirmed the inhibitory effect of miR-335 and miR-544 on OCT4A expression. In contrast, the miR-335 inhibitory effect was reversed in the presence of Linc-ROR, resulting in the upregulation of OCT4A. Such evidence suggests that Linc-ROR may compete with OCT4A to interact with miR-335.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Linc-ROR; OCT4A; ceRNA; miRNA-335

Mesh:

Substances:

Year:  2021        PMID: 34669056     DOI: 10.1007/s10528-021-10140-0

Source DB:  PubMed          Journal:  Biochem Genet        ISSN: 0006-2928            Impact factor:   1.890


  41 in total

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Journal:  Nat Methods       Date:  2007-08-12       Impact factor: 28.547

3.  Target mRNA abundance dilutes microRNA and siRNA activity.

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4.  Target mimicry provides a new mechanism for regulation of microRNA activity.

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Journal:  Nat Genet       Date:  2007-07-22       Impact factor: 38.330

5.  The impact of miRNA target sites in coding sequences and in 3'UTRs.

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Journal:  PLoS One       Date:  2011-03-22       Impact factor: 3.240

6.  Linc-ROR Promotes Osteogenic Differentiation of Mesenchymal Stem Cells by Functioning as a Competing Endogenous RNA for miR-138 and miR-145.

Authors:  Lu Feng; Liu Shi; Ying-Fei Lu; Bin Wang; Tao Tang; Wei-Ming Fu; Wei He; Gang Li; Jin-Fang Zhang
Journal:  Mol Ther Nucleic Acids       Date:  2018-03-12       Impact factor: 8.886

7.  LncRNA GAS5 enhanced the killing effect of NK cell on liver cancer through regulating miR-544/RUNX3.

Authors:  Peipei Fang; Luxia Xiang; Weilai Chen; Shaoxun Li; Shanshan Huang; Jie Li; Lu Zhuge; Lingxiang Jin; Wenke Feng; Yiping Chen; Chenwei Pan
Journal:  Innate Immun       Date:  2019-02       Impact factor: 2.680

8.  Oct-4 expression maintained cancer stem-like properties in lung cancer-derived CD133-positive cells.

Authors:  Yu-Chih Chen; Han-Shui Hsu; Yi-Wei Chen; Tung-Hu Tsai; Chorng-Kuang How; Chien-Ying Wang; Shih-Chieh Hung; Yuh-Lih Chang; Ming-Long Tsai; Yi-Yen Lee; Hung-Hai Ku; Shih-Hwa Chiou
Journal:  PLoS One       Date:  2008-07-09       Impact factor: 3.240

9.  miRDB: an online database for prediction of functional microRNA targets.

Authors:  Yuhao Chen; Xiaowei Wang
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

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Authors:  Sarah Djebali; Carrie A Davis; Angelika Merkel; Alex Dobin; Timo Lassmann; Ali Mortazavi; Andrea Tanzer; Julien Lagarde; Wei Lin; Felix Schlesinger; Chenghai Xue; Georgi K Marinov; Jainab Khatun; Brian A Williams; Chris Zaleski; Joel Rozowsky; Maik Röder; Felix Kokocinski; Rehab F Abdelhamid; Tyler Alioto; Igor Antoshechkin; Michael T Baer; Nadav S Bar; Philippe Batut; Kimberly Bell; Ian Bell; Sudipto Chakrabortty; Xian Chen; Jacqueline Chrast; Joao Curado; Thomas Derrien; Jorg Drenkow; Erica Dumais; Jacqueline Dumais; Radha Duttagupta; Emilie Falconnet; Meagan Fastuca; Kata Fejes-Toth; Pedro Ferreira; Sylvain Foissac; Melissa J Fullwood; Hui Gao; David Gonzalez; Assaf Gordon; Harsha Gunawardena; Cedric Howald; Sonali Jha; Rory Johnson; Philipp Kapranov; Brandon King; Colin Kingswood; Oscar J Luo; Eddie Park; Kimberly Persaud; Jonathan B Preall; Paolo Ribeca; Brian Risk; Daniel Robyr; Michael Sammeth; Lorian Schaffer; Lei-Hoon See; Atif Shahab; Jorgen Skancke; Ana Maria Suzuki; Hazuki Takahashi; Hagen Tilgner; Diane Trout; Nathalie Walters; Huaien Wang; John Wrobel; Yanbao Yu; Xiaoan Ruan; Yoshihide Hayashizaki; Jennifer Harrow; Mark Gerstein; Tim Hubbard; Alexandre Reymond; Stylianos E Antonarakis; Gregory Hannon; Morgan C Giddings; Yijun Ruan; Barbara Wold; Piero Carninci; Roderic Guigó; Thomas R Gingeras
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  1 in total

1.  Post-Transcriptional Effects of miRNAs on PCSK7 Expression and Function: miR-125a-5p, miR-143-3p, and miR-409-3p as Negative Regulators.

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Journal:  Metabolites       Date:  2022-06-23
  1 in total

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